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Impact of Ser17 Phosphorylation on the Conformational Dynamics of the Oncoprotein MDM2
Juan A Bueren-Calabuig1,2, Julien Michel1
1EaStCHEM School of Chemistry, The University of Edinburgh , Edinburgh, EH9 3FJ, United Kingdom.
Abstract:
MDM2 is an important oncoprotein that downregulates the activity of the tumor suppressor protein p53 via binding of its N-terminal domain to the p53 transactivation domain. The first 24 residues of the MDM2 N-terminal domain form an intrinsically disordered "lid" region that interconverts on a millisecond time scale between "open" and "closed" states in unliganded MDM2. While the former conformational state is expected to facilitate p53 binding, the latter competes in a pseudo-substrate manner with p53 for its binding site. Phosphorylation of serine 17 in the MDM2 lid region is thought to modulate the equilibrium between "open" and "closed" lid states, but contradictory findings on the favored lid conformational state upon phosphorylation have been reported. Here, the nature of the conformational states of MDM2 pSer17 and Ser17Asp variants was addressed by means of enhanced sampling molecular dynamics simulations. Detailed analyses of the computed lid conformational ensembles indicate that both lid variants stabilize a "closed" state, with respect to wild type. Nevertheless, the nature of the closed-state conformational ensembles differs significantly between the pSer17 and Ser17Asp variants. Thus, care should be applied in the interpretation of biochemical experiments that use phosphomimetic variants to model the effects of phosphorylation on the structure and dynamics of this disordered protein region.
Insights
MDM2 oncoprotein
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- MDM2 protein downregulates tumor suppressor p53 activity.
- MDM2's N-terminal lid region dynamics influence p53 binding.
- Phosphorylation's effect on MDM2 lid conformation is debated.
Purpose of the Study:
- Investigate the conformational states of MDM2 variants (pSer17 and Ser17Asp).
- Clarify the impact of serine 17 phosphorylation on MDM2 lid dynamics.
Main Methods:
- Enhanced sampling molecular dynamics simulations were employed.
- Analysis of lid conformational ensembles for wild-type and variant MDM2.
Main Results:
- Both pSer17 and Ser17Asp variants stabilize a 'closed' lid state compared to wild type.
- Distinct conformational ensembles arise in the closed state for pSer17 and Ser17Asp variants.
- The nature of the closed state differs significantly between the two variants.
Conclusions:
- Phosphorylation at serine 17 and phosphomimetic substitutions stabilize the MDM2 lid in a closed conformation.
- The specific nature of the closed state varies between phosphorylated and phosphomimetic variants.
- Caution is advised when interpreting phosphomimetic variant data for phosphorylation effects on disordered protein regions.
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