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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
p53 Maintains Genomic Stability by Preventing Interference between Transcription and Replication
Constance Qiao Xin Yeo1, Irina Alexander2, Zhaoru Lin1
1IFOM-p53Lab Joint Research Laboratory, Agency for Science, Technology and Research, Singapore 138648, Singapore.
Abstract:
p53 tumor suppressor maintains genomic stability, typically acting through cell-cycle arrest, senescence, and apoptosis. We discovered a function of p53 in preventing conflicts between transcription and replication, independent of its canonical roles. p53 deficiency sensitizes cells to Topoisomerase (Topo) II inhibitors, resulting in DNA damage arising spontaneously during replication. Topoisomerase IIα (TOP2A)-DNA complexes preferentially accumulate in isogenic p53 mutant or knockout cells, reflecting an increased recruitment of TOP2A to regulate DNA topology. We propose that p53 acts to prevent DNA topological stress originating from transcription during the S phase and, therefore, promotes normal replication fork progression. Consequently, replication fork progression is impaired in the absence of p53, which is reversed by transcription inhibition. Pharmacologic inhibition of transcription also attenuates DNA damage and decreases Topo-II-DNA complexes, restoring cell viability in p53-deficient cells. Together, our results demonstrate a function of p53 that may underlie its role in tumor suppression.
Insights
The tumor suppressor p53 prevents DNA replication conflicts, independent of its known roles. Its absence causes DNA damage during replication, which is reversed by inhibiting transcription.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- The p53 tumor suppressor is crucial for maintaining genomic stability through cell-cycle arrest, senescence, and apoptosis.
- Canonical p53 functions do not fully explain its role in preventing DNA damage during replication.
- Replication-transcription conflicts can lead to genomic instability and are implicated in cancer development.
Purpose of the Study:
- To investigate a novel, non-canonical function of p53 in preventing conflicts between DNA transcription and replication.
- To understand the role of p53 in regulating DNA topology and Topoisomerase II activity during S phase.
- To explore therapeutic strategies targeting p53-deficient cells by modulating transcription or Topoisomerase II activity.
Main Methods:
- Utilized isogenic p53 mutant and knockout cell lines.
- Assessed DNA damage and Topoisomerase IIα (TOP2A)-DNA complex formation.
- Employed pharmacologic inhibition of transcription and Topoisomerase II inhibitors.
Main Results:
- p53 deficiency leads to spontaneous DNA damage during replication and increased TOP2A-DNA complex accumulation.
- Replication fork progression is impaired in p53-deficient cells, but this is reversed by transcription inhibition.
- Inhibition of transcription attenuates DNA damage and restores cell viability in p53-deficient cells.
Conclusions:
- p53 plays a critical role in preventing DNA topological stress arising from transcription during S phase, thereby ensuring normal replication fork progression.
- This newly identified function of p53 is independent of its canonical roles in cell-cycle arrest, senescence, and apoptosis.
- Targeting transcription in p53-deficient cancers represents a potential therapeutic strategy to mitigate replication stress and DNA damage.
Related Concept Videos
DNA Damage Can Stall the Cell Cycle
DNA Damage can Stall the Cell Cycle
Negative Regulator Molecules
Abnormal Proliferation
Restarting Stalled Replication Forks
The DNA Replication Fork

