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Generating Transposon Insertion Libraries in Gram-Negative Bacteria for High-Throughput Sequencing
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A novel method for identifying polymorphic transposable elements via scanning of high-throughput short reads

Houxiang Kang1, Dan Zhu2, Runmao Lin3

  • 1State Key Laboratory for Biology of Plant Diseases and Insect Pest, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China kanghouxiangcaas@163.com wang.620@osu.edu.

DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes
|April 22, 2016
PubMed
Summary

A new computational method, PTEMD, efficiently discovers polymorphic transposable elements (TEs) and their movements. This tool identified numerous polymorphic TE families in rice blast fungus and maize, revealing insights into genetic diversity.

Keywords:
high-throughput sequencingmaizepolymorphic transposonrice blast fungus

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