Genome-wide profiling of long non-coding RNA expression patterns in the EGFR-TKI resistance of lung adenocarcinoma by

Ying Wu1, Dan-Dan Yu1, Yong Hu2

  • 1The First Clinical School of Nanjing Medical University, Nanjing, Jiangsu 210009, P.R. China.

Oncology Reports
|April 26, 2016
PubMed

Insights

Long non-coding RNAs (lncRNAs) are implicated in acquired resistance to epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) in lung cancer. Dysregulated lncRNAs may serve as biomarkers and therapeutic targets for overcoming EGFR-TKI resistance.

Area of Science:

  • Oncology
  • Molecular Biology
  • Genetics

Background:

  • Activating mutations in the epidermal growth factor receptor (EGFR) drive lung adenocarcinoma sensitivity to EGFR tyrosine kinase inhibitors (TKIs).
  • Acquired resistance to EGFR TKIs is a significant challenge in long-term lung cancer therapy.
  • Long non-coding RNAs (lncRNAs) are increasingly recognized for their roles in cancer development and drug resistance.

Purpose of the Study:

  • To investigate the molecular mechanisms underlying acquired resistance to EGFR TKIs.
  • To identify dysregulated long non-coding RNAs (lncRNAs) in EGFR-TKI-resistant lung adenocarcinoma cells.
  • To explore the potential of lncRNAs as biomarkers and therapeutic targets for EGFR-TKI resistance.

Main Methods:

  • Generation of an EGFR-TKI-resistant cell line (HCC827-8-1) from a parental lung adenocarcinoma cell line (HCC827).
  • lncRNA microarray analysis to compare expression profiles between resistant and parental cells.
  • Validation of selected lncRNA expression levels using real-time quantitative PCR.
  • Functional analysis to infer the involvement of lncRNAs in relevant biological pathways.

Main Results:

  • A total of 1,476 lncRNA transcripts and 1,026 mRNA transcripts were found to be dysregulated in the EGFR-TKI-resistant HCC827-8-1 cells compared to HCC827 cells.
  • Expression levels of seven specific lncRNAs were validated.
  • Functional analysis suggested that several lncRNAs may regulate protein-coding genes through cis- and/or trans-acting mechanisms, potentially contributing to EGFR-TKI resistance.

Conclusions:

  • lncRNAs are significantly dysregulated in EGFR-TKI-resistant lung adenocarcinoma.
  • These dysregulated lncRNAs may play crucial roles in the development of EGFR-TKI resistance.
  • lncRNAs represent promising novel candidate biomarkers and potential therapeutic targets for overcoming EGFR-TKI resistance in lung cancer.