Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Introduction to Metabolism01:30

Introduction to Metabolism

3.5K
Metabolism encompasses all biochemical reactions in a living organism, facilitating both the breakdown and synthesis of biomolecules. These metabolic processes are categorized into catabolic and anabolic pathways, which operate in a coordinated manner to ensure energy balance and cellular function.Catabolic Pathways and Energy ReleaseCatabolic pathways involve the breakdown of complex macromolecules such as carbohydrates, lipids, and proteins into smaller structures like monosaccharides, fatty...
3.5K
Overview of Metabolism01:40

Overview of Metabolism

40.8K
Living cells constantly carry out various chemical reactions which are necessary for their proper functioning. These reactions are interlinked to one another via multiple pathways. The collection of these chemical reactions is known as metabolism.
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...
40.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Prediction of plant food allergens using protein embeddings.

Bioinformatics advances·2026
Same author

Metabolite names and identifiers: how far are we from interoperability?

Metabolomics : Official journal of the Metabolomic Society·2026
Same author

Cell atlases and the developmental foundations of the phenotype.

PLoS computational biology·2026
Same author

Detection of Specificity-Determining Positions in Protein Families.

Methods in molecular biology (Clifton, N.J.)·2025
Same author

A review on Gene Ontology evaluations.

Database : the journal of biological databases and curation·2025
Same author

Better understanding the phenotypic effects of drugs through shared targets in genetic disease networks.

Frontiers in pharmacology·2025

Related Experiment Video

Updated: Mar 22, 2026

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis
07:11

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis

Published on: November 10, 2023

3.4K

Functional Analysis of Metabolomics Data.

Mónica Chagoyen1, Javier López-Ibáñez1, Florencio Pazos2

  • 1Computational Systems Biology Group (CNB-CSIC), C/ Darwin, 3, Madrid, 28049, Spain.

Methods in Molecular Biology (Clifton, N.J.)
|April 27, 2016
PubMed
Summary
This summary is machine-generated.

Metabolomics research uses annotation enrichment analysis to identify overrepresented compounds in biological samples. This study provides protocols for this analysis and visualizing metabolic networks using free web tools.

Keywords:
BioinformaticsFunctional enrichmentMetabolic pathwayMetabolismMetaboliteMetabolomics

More Related Videos

A Strategy for Sensitive, Large Scale Quantitative Metabolomics
14:18

A Strategy for Sensitive, Large Scale Quantitative Metabolomics

Published on: May 27, 2014

21.9K
Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS
07:34

Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS

Published on: March 14, 2013

13.6K

Related Experiment Videos

Last Updated: Mar 22, 2026

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis
07:11

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis

Published on: November 10, 2023

3.4K
A Strategy for Sensitive, Large Scale Quantitative Metabolomics
14:18

A Strategy for Sensitive, Large Scale Quantitative Metabolomics

Published on: May 27, 2014

21.9K
Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS
07:34

Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS

Published on: March 14, 2013

13.6K

Area of Science:

  • Metabolomics
  • Systems Biology
  • Bioinformatics

Background:

  • Metabolomics aims to identify all small molecules in biological systems.
  • Increasingly large datasets require robust functional analysis to derive biological insights.
  • Annotation enrichment analysis is a common method for interpreting omics data.

Purpose of the Study:

  • To describe protocols for annotation enrichment analysis in metabolomics.
  • To provide methods for visualizing compound sets within metabolic networks.
  • To utilize freely accessible web tools for these analyses.

Main Methods:

  • Utilizing annotation enrichment analysis to find overrepresented pathways or functions.
  • Employing web-based tools for data analysis and visualization.
  • Mapping identified compounds onto metabolic network representations.

Main Results:

  • Established protocols for performing functional analysis of metabolomics data.
  • Demonstrated methods for visualizing compound sets in metabolic networks.
  • Highlighted the utility of free, accessible web resources for metabolomics research.

Conclusions:

  • Annotation enrichment analysis is crucial for extracting biological knowledge from metabolomics data.
  • Visualization of compounds within metabolic networks aids interpretation.
  • Free web tools offer accessible solutions for these analytical tasks.