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Updated: Mar 21, 2026

Single-throughput Complementary High-resolution Analytical Techniques for Characterizing Complex Natural Organic Matter Mixtures
Published on: January 7, 2019
Combining parallel factor analysis and machine learning for the classification of dissolved organic matter according
C W Cuss1, S M McConnell2, C Guéguen3
1Environmental and Life Sciences Graduate Program, Trent University, ON, Canada.
This study combined Parallel Factor (PARAFAC) analysis with machine learning methods (MLM) to accurately classify dissolved organic matter (DOM) sources. The approach effectively distinguished between riverine and leached DOM, improving our understanding of carbon flow in ecosystems.
Area of Science:
- Environmental Chemistry
- Biogeochemistry
- Analytical Chemistry
Background:
- Dissolved organic matter (DOM) fluorescence analysis using Parallel Factor (PARAFAC) analysis is crucial for understanding its biogeochemical cycling.
- Existing PARAFAC-based methods lack holistic approaches for distinguishing DOM sources.
- Accurate source identification is vital for comprehensive carbon flow assessments in ecosystems.
Purpose of the Study:
- To develop and evaluate machine learning methods (MLM) for classifying DOM sources based on PARAFAC-analyzed excitation-emission matrices (EEMs).
- To assess the impact of experimental treatments and dataset properties on DOM classification accuracy.
- To establish a robust method for distinguishing between riverine and leached DOM fluorescence signatures.
Main Methods:
- Classified 1029 PARAFAC-analyzed EEMs from leaf leachates, rivers, and standards using four MLMs.
- Evaluated classification performance across various subsets, including whole EEMs, size-fractionated DOM, mixtures, and quenched samples.
- Optimized PARAFAC models from 10 to 12 components to improve residual peak removal and classification accuracy.
Main Results:
- The 12-component PARAFAC model enhanced classification accuracy, particularly for datasets with size-fractionated DOM or diverse sources.
- MLM achieved high accuracy in classifying riverine DOM (up to 87.0%), leachates (up to 92.5%), and distinguishing between them (97.2%).
- Multilayer perceptron and support vector machines demonstrated superior performance among the tested MLMs, with N-way partial least-squares discriminant analysis showing comparable results.
Conclusions:
- Combining PARAFAC with MLM provides an effective strategy for classifying DOM based on fluorescence signatures.
- PARAFAC isolates meaningful fluorescent species, while MLM simultaneously classifies EEMs into distinct categories.
- This integrated approach enhances the accurate accounting of carbon flows by identifying diverse DOM sources and their contributions.
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