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High-performance web services for querying gene and variant annotation.

Jiwen Xin1, Adam Mark1,2, Cyrus Afrasiabi1

  • 1Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

Genome Biology
|May 8, 2016
PubMed
Summary
This summary is machine-generated.

MyGene.info and MyVariant.info offer efficient web services for accessing fragmented gene and human genetic variant annotation data. These high-performance tools are crucial for high-throughput biology research and data integration.

Keywords:
APIAnnotationCloudDatabaseGeneRepositoryVariant

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Area of Science:

  • Bioinformatics
  • Genomics
  • Data Science

Background:

  • High-throughput biology relies on efficient data management and integration.
  • Gene and human genetic variant annotations are critical but fragmented across numerous resources.

Purpose of the Study:

  • To introduce MyGene.info and MyVariant.info as high-performance web services for querying biological annotation information.
  • To present a generalizable cloud-based model for organizing and accessing biological data.

Main Methods:

  • Development of high-performance web services (MyGene.info and MyVariant.info).
  • Implementation of a cloud-based architecture for data organization and querying.

Main Results:

  • MyGene.info and MyVariant.info provide efficient access to gene and variant annotation data.
  • These services are accessed over three million times monthly, indicating high utility.
  • A scalable cloud-based model for biological data management has been demonstrated.

Conclusions:

  • MyGene.info and MyVariant.info are valuable, high-performance resources for the research community.
  • The developed model offers a scalable solution for biological annotation data integration.
  • These services are freely available to researchers.