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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Upregulated long non-coding RNA AGAP2-AS1 represses LATS2 and KLF2 expression through interacting with EZH2 and LSD1
1Department of Oncology, First Affiliated Hospital, Nanjing Medical University, Nanjing, People's Republic of China.
Abstract:
Recently, long non-coding RNAs (lncRNAs) are identified as new crucial regulators of diverse cellular processes, including cell proliferation, differentiation and cancer cells metastasis. Accumulating evidence has revealed that aberrant lncRNA expression plays important roles in carcinogenesis and tumor progression. However, the expression pattern and biological function of lncRNAs in non-small-cell lung cancer (NSCLC) remain largely unknown. In this study, we performed comprehensive analysis of lncRNA expression in human NSCLC samples by using microarray data from Gene Expression Omnibus. After validation in a cohort of 80 pairs of NSCLC tissues, we identified a differentially expressed novel oncogenic lncRNA termed as AGAP2-AS1. The AGAP2-AS1 expression level was significantly upregulated in NSCLC tissues and negatively correlated with poor prognostic outcomes in patients. In vitro loss- and gain-of-function assays revealed that AGAP2-AS1 knockdown inhibited cell proliferation, migration and invasion, and induced cell apoptosis. In vivo assays also confirmed the ability of AGAP2-AS1 to promote tumor growth. Furthermore, mechanistic investigation showed that AGAP2-AS1 could bind with enhancer of zeste homolog 2 and lysine (K)-specific demethylase 1A, and recruit them to KLF2 and LATS2 promoter regions to repress their transcription. Taken together, our findings indicate that AGAP2-AS1 may act as an oncogene by repressing tumor-suppressor LATS2 and KLF2 transcription. By clarifying the AGAP2-AS1 mechanisms underlying NSCLC development and progression, these findings might promote the development of novel therapeutic strategies for this disease.
Insights
A novel long non-coding RNA, AGAP2-AS1, is upregulated in non-small cell lung cancer (NSCLC) and promotes tumor growth by inhibiting tumor suppressors. This finding offers potential new therapeutic targets for NSCLC.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Long non-coding RNAs (lncRNAs) regulate cellular processes and are implicated in cancer.
- The role of lncRNAs in non-small cell lung cancer (NSCLC) is largely unexplored.
Purpose of the Study:
- To identify and characterize novel lncRNAs involved in NSCLC pathogenesis.
- To elucidate the functional role and molecular mechanisms of AGAP2-AS1 in NSCLC.
Main Methods:
- Comprehensive analysis of lncRNA expression in NSCLC tissues using microarray data.
- Validation of AGAP2-AS1 expression in 80 NSCLC tissue pairs.
- In vitro and in vivo functional assays (loss- and gain-of-function).
- Mechanistic studies involving protein-protein interactions and promoter analysis.
Main Results:
- AGAP2-AS1 was significantly upregulated in NSCLC tissues and associated with poor prognosis.
- AGAP2-AS1 knockdown inhibited proliferation, migration, invasion, and induced apoptosis in NSCLC cells.
- AGAP2-AS1 promoted tumor growth in vivo.
- AGAP2-AS1 recruits EZH2 and LSD1 to repress KLF2 and LATS2 transcription.
Conclusions:
- AGAP2-AS1 acts as an oncogene in NSCLC by suppressing tumor suppressors KLF2 and LATS2.
- AGAP2-AS1 is a potential therapeutic target for NSCLC treatment.
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