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Updated: Mar 20, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Allosteric Interactions by p53 mRNA Govern HDM2 E3 Ubiquitin Ligase Specificity under Different Conditions
Ixaura Medina-Medina1, Paola García-Beltrán1, Ignacio de la Mora-de la Mora2
1Laboratorio de Interacciones Biomoleculares y Cáncer, Instituto de Física, Universidad Autónoma de San Luis Potosí, San Luis Potosí, México.
Abstract:
HDM2 and HDMX are key negative regulatory factors of the p53 tumor suppressor under normal conditions by promoting its degradation or preventing its trans activity, respectively. It has more recently been shown that both proteins can also act as positive regulators of p53 after DNA damage. This involves phosphorylation by ATM on serine residues HDM2(S395) and HDMX(S403), promoting their respective interaction with the p53 mRNA. However, the underlying molecular mechanisms of how these phosphorylation events switch HDM2 and HDMX from negative to positive regulators of p53 is not known. Our results show that these phosphorylation events reside within intrinsically disordered domains and change the conformation of the proteins. The modifications promote the exposition of N-terminal interfaces that support the formation of a new HDMX-HDM2 heterodimer independent of the C-terminal RING-RING interaction. The E3 ubiquitin ligase activity of this complex toward p53 is prevented by the p53 mRNA ligand but, interestingly, does not affect the capacity to ubiquitinate HDMX and HDM2. These results show how ATM-mediated modifications of HDMX and HDM2 switch HDM2 E3 ubiquitin ligase activity away from p53 but toward HDMX and itself and illustrate how the substrate specificity of HDM2 E3 ligase activity is regulated.
Insights
ATM-mediated phosphorylation switches HDM2 and HDMX from negative to positive regulators of p53. This modification alters protein conformation, shifting E3 ubiquitin ligase activity from p53 to HDM2 and HDMX, regulating p53 tumor suppressor activity.
Area of Science:
- Molecular Biology
- Cancer Research
- Protein Biochemistry
Background:
- HDM2 and HDMX normally inhibit the p53 tumor suppressor.
- After DNA damage, ATM-mediated phosphorylation converts HDM2 and HDMX into positive regulators of p53.
- The mechanism for this regulatory switch remains unclear.
Purpose of the Study:
- To elucidate the molecular mechanisms by which ATM-mediated phosphorylation alters HDM2 and HDMX function.
- To understand how these modifications switch their regulatory role from negative to positive for p53.
Main Methods:
- Analysis of intrinsically disordered domains.
- Conformational change studies.
- Investigation of protein-protein interactions and E3 ubiquitin ligase activity.
Main Results:
- Phosphorylation occurs in intrinsically disordered domains, inducing conformational changes.
- These changes expose N-terminal interfaces, forming a novel HDMX-HDM2 heterodimer.
- p53 mRNA binding prevents p53 ubiquitination but not HDM2/HDMX auto-ubiquitination.
Conclusions:
- ATM-mediated phosphorylation of HDM2 and HDMX switches their E3 ubiquitin ligase activity from p53 to themselves and each other.
- This regulation impacts p53 tumor suppressor activity and substrate specificity of the HDM2 ligase.
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