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Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark
Published on: January 26, 2018
Biological function and regulation of histone and non-histone lysine methylation in response to DNA damage
1Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), State Key Laboratory of Natural and Biomimetic Drugs, Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, China Peking University-Tsinghua University Center for Life Sciences, Beijing 100191, China.
Abstract:
DNA damage response (DDR) signaling network is initiated to protect cells from various exogenous and endogenous damage resources. Timely and accurate regulation of DDR proteins is required for distinct DNA damage repair pathways. Post-translational modifications of histone and non-histone proteins play a vital role in the DDR factor foci formation and signaling pathway. Phosphorylation, ubiquitylation, SUMOylation, neddylation, poly(ADP-ribosyl)ation, acetylation, and methylation are all involved in the spatial-temporal regulation of DDR, among which phosphorylation and ubiquitylation are well studied. Studies in the past decade also revealed extensive roles of lysine methylation in response to DNA damage. Lysine methylation is finely regulated by plenty of lysine methyltransferases, lysine demethylases, and can be recognized by proteins with chromodomain, plant homeodomain, Tudor domain, malignant brain tumor domain, or proline-tryptophan-tryptophan-proline domain. In this review, we outline the dynamics and regulation of histone lysine methylation at canonical (H3K4, H3K9, H3K27, H3K36, H3K79, and H4K20) and non-canonical sites after DNA damage, and discuss their context-specific functions in DDR protein recruitment or extraction, chromatin environment establishment, and transcriptional regulation. We also present the emerging advances of lysine methylation in non-histone proteins during DDR.
Insights
Lysine methylation, a key epigenetic modification, is crucial for DNA damage response (DDR) and DNA repair. This review details histone and non-histone lysine methylation dynamics and functions in DDR.
Area of Science:
- Molecular Biology
- Epigenetics
- Cellular Biology
Background:
- The DNA damage response (DDR) network protects cells from DNA damage.
- Post-translational modifications of proteins are critical for DDR pathways.
- Lysine methylation is an emerging key epigenetic regulator in DDR.
Purpose of the Study:
- To review the dynamics and regulation of histone lysine methylation in response to DNA damage.
- To discuss the functions of histone lysine methylation in DDR.
- To highlight advances in understanding lysine methylation of non-histone proteins during DDR.
Main Methods:
- Literature review of studies on DNA damage response and epigenetic modifications.
- Analysis of research on histone and non-histone lysine methylation.
- Synthesis of findings on the role of lysine methylation in DDR pathways.
Main Results:
- Histone lysine methylation at canonical and non-canonical sites is dynamically regulated after DNA damage.
- Lysine methylation influences DDR protein recruitment, chromatin structure, and transcriptional regulation.
- Emerging evidence shows significant roles for lysine methylation in non-histone proteins during DDR.
Conclusions:
- Lysine methylation is a vital epigenetic mechanism regulating DDR and DNA repair.
- Further research into lysine methylation of histone and non-histone proteins will deepen our understanding of DDR.
- Targeting lysine methylation pathways may offer therapeutic strategies for DNA damage-related diseases.
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