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Updated: Mar 20, 2026

Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
Published on: April 11, 2016
Future paradigms for precision oncology
Giannoula Lakka Klement1,2, Knarik Arkun3, Dalibor Valik4,5
1Department of Pediatric Hematology/Oncology, Floating Hospital for Children at Tufts Medical Center, Boston, MA, USA.
Abstract:
Research has exposed cancer to be a heterogeneous disease with a high degree of inter-tumoral and intra-tumoral variability. Individual tumors have unique profiles, and these molecular signatures make the use of traditional histology-based treatments problematic. The conventional diagnostic categories, while necessary for care, thwart the use of molecular information for treatment as molecular characteristics cross tissue types.This is compounded by the struggle to keep abreast the scientific advances made in all fields of science, and by the enormous challenge to organize, cross-reference, and apply molecular data for patient benefit. In order to supplement the site-specific, histology-driven diagnosis with genomic, proteomic and metabolomics information, a paradigm shift in diagnosis and treatment of patients is required.While most physicians are open and keen to use the emerging data for therapy, even those versed in molecular therapeutics are overwhelmed with the amount of available data. It is not surprising that even though The Human Genome Project was completed thirteen years ago, our patients have not benefited from the information. Physicians cannot, and should not be asked to process the gigabytes of genomic and proteomic information on their own in order to provide patients with safe therapies. The following consensus summary identifies the needed for practice changes, proposes potential solutions to the present crisis of informational overload, suggests ways of providing physicians with the tools necessary for interpreting patient specific molecular profiles, and facilitates the implementation of quantitative precision medicine. It also provides two case studies where this approach has been used.
Insights
Cancer
Area of Science:
- Oncology
- Genomics
- Proteomics
- Metabolomics
Background:
- Cancer is a heterogeneous disease with significant inter-tumoral and intra-tumoral variability.
- Traditional histology-based cancer diagnosis and treatment face challenges due to molecular heterogeneity.
- Conventional diagnostic categories limit the integration of molecular data across tissue types.
Observation:
- Physicians struggle to keep pace with scientific advances and manage vast amounts of molecular data.
- Despite the Human Genome Project completion, patients have not fully benefited from genomic information.
- Overwhelming data prevents physicians from independently processing molecular profiles for safe, effective therapies.
Findings:
- A paradigm shift in cancer diagnosis and treatment is necessary to integrate genomic, proteomic, and metabolomic data.
- Physicians require tools to interpret patient-specific molecular profiles for quantitative precision medicine.
- The consensus identifies needed practice changes and proposes solutions for informational overload in molecular therapeutics.
Implications:
- Implementing quantitative precision medicine can improve patient outcomes by leveraging molecular insights.
- Developing systems to support physicians in interpreting complex molecular data is crucial.
- Bridging the gap between molecular data and clinical practice is essential for advancing cancer care.
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