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Focus Formation: A Cell-based Assay to Determine the Oncogenic Potential of a Gene
Published on: December 31, 2014
The MYC 3' Wnt-Responsive Element Drives Oncogenic MYC Expression in Human Colorectal Cancer Cells
Sherri A Rennoll1, Melanie A Eshelman2, Wesley M Raup-Konsavage3
1Department of Biochemistry & Molecular Biology, The Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. sar333@psu.edu.
Abstract:
Mutations in components of the Wnt/β-catenin signaling pathway drive colorectal cancer (CRC) by deregulating expression of downstream target genes including the c-MYC proto-oncogene (MYC). The critical regulatory DNA enhancer elements that control oncogenic MYC expression in CRC have yet to be fully elucidated. In previous reports, we correlated T-cell factor (TCF) and β-catenin binding to the MYC 3' Wnt responsive DNA element (MYC 3' WRE) with MYC expression in HCT116 cells. Here we used CRISPR/Cas9 to determine whether this element is a critical driver of MYC. We isolated a clonal population of cells that contained a deletion of a single TCF binding element (TBE) within the MYC 3' WRE. This deletion reduced TCF/β-catenin binding to this regulatory element and decreased MYC expression. Using RNA-Seq analysis, we found altered expression of genes that regulate metabolic processes, many of which are known MYC target genes. We found that 3' WRE-Mut cells displayed a reduced proliferative capacity, diminished clonogenic growth, and a decreased potential to form tumors in vivo. These findings indicate that the MYC 3' WRE is a critical driver of oncogenic MYC expression and suggest that this element may serve as a therapeutic target for CRC.
Insights
The MYC 3' Wnt responsive DNA element (MYC 3' WRE) drives colorectal cancer (CRC) by regulating c-MYC (MYC) expression. Targeting this element could offer a new therapeutic strategy for CRC.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Wnt/β-catenin signaling pathway mutations drive colorectal cancer (CRC) by altering gene expression.
- The c-MYC proto-oncogene (MYC) is a key oncogene in CRC, but its regulatory elements are not fully understood.
- Previous studies linked T-cell factor (TCF) and β-catenin binding to the MYC 3' Wnt responsive DNA element (MYC 3' WRE) with MYC expression in CRC cells.
Purpose of the Study:
- To investigate the role of the MYC 3' WRE as a critical driver of oncogenic MYC expression in CRC.
- To determine if the MYC 3' WRE is a potential therapeutic target for colorectal cancer.
Main Methods:
- CRISPR/Cas9 gene editing was used to create a deletion in a TCF binding element (TBE) within the MYC 3' WRE.
- Analysis of TCF/β-catenin binding, MYC expression, and gene expression profiles (RNA-Seq) in edited cells.
- Assessment of cellular proliferation, clonogenic growth, and tumor formation in vivo.
Main Results:
- Deletion of a single TBE within the MYC 3' WRE reduced TCF/β-catenin binding and decreased MYC expression.
- RNA-Seq revealed altered expression of metabolic genes, many of which are known MYC targets.
- Edited cells exhibited reduced proliferation, diminished colony formation, and decreased tumorigenicity.
Conclusions:
- The MYC 3' WRE is a critical regulatory element driving oncogenic MYC expression in CRC.
- The MYC 3' WRE represents a potential therapeutic target for colorectal cancer treatment.
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