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Cycloheximide Chase Analysis of Protein Degradation in Saccharomyces cerevisiae
Published on: April 18, 2016
Substrate Recognition by the Cdh1 Destruction Box Receptor Is a General Requirement for APC/CCdh1-mediated
Liang Qin1, Dimitrius Santiago P S F Guimarães1, Michael Melesse1
1From the Department of Biochemistry and Center for Cancer Research, Purdue University, West Lafayette, Indiana 47907.
Abstract:
The anaphase-promoting complex, or cyclosome (APC/C), is a ubiquitin ligase that selectively targets proteins for degradation in mitosis and the G1 phase and is an important component of the eukaryotic cell cycle control system. How the APC/C specifically recognizes its substrates is not fully understood. Although well characterized degron motifs such as the destruction box (D-box) and KEN-box are commonly found in APC/C substrates, many substrates apparently lack these motifs. A variety of alternative APC/C degrons have been reported, suggesting either that multiple modes of substrate recognition are possible or that our definitions of degron structure are incomplete. We used an in vivo yeast assay to compare the G1 degradation rate of 15 known substrates of the APC/C co-activator Cdh1 under normal conditions and conditions that impair binding of D-box, KEN-box, and the recently identified ABBA motif degrons to Cdh1. The D-box receptor was required for efficient proteolysis of all Cdh1 substrates, despite the absence of canonical D-boxes in many. In contrast, the KEN-box receptor was only required for normal proteolysis of a subset of substrates and the ABBA motif receptor for a single substrate in our system. Our results suggest that binding to the D-box receptor may be a shared requirement for recognition and processing of all Cdh1 substrates.
Insights
The anaphase-promoting complex (APC/C) targets proteins for degradation. This study reveals that the D-box receptor is crucial for all APC/C-Cdh1 substrate degradation, even those lacking canonical D-boxes.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- The anaphase-promoting complex/cyclosome (APC/C) is a critical ubiquitin ligase regulating the eukaryotic cell cycle.
- APC/C controls protein degradation during mitosis and G1 phase.
- Substrate recognition by APC/C is not fully understood, with known motifs like D-box and KEN-box not present in all substrates.
Purpose of the Study:
- To investigate the mechanisms of APC/C substrate recognition and degradation.
- To determine the role of different degron motifs (D-box, KEN-box, ABBA) in APC/C-Cdh1 substrate processing.
- To identify essential recognition pathways for APC/C substrates lacking canonical degrons.
Main Methods:
- Utilized an in vivo yeast assay to assess protein degradation rates.
- Compared degradation of 15 known APC/C-Cdh1 substrates under varying conditions.
- Manipulated conditions to impair the binding of D-box, KEN-box, and ABBA motifs to Cdh1.
Main Results:
- The D-box receptor was essential for the efficient proteolysis of all tested Cdh1 substrates.
- Many substrates degraded efficiently despite lacking canonical D-boxes.
- The KEN-box and ABBA motif receptors played roles in a subset and single substrate, respectively.
Conclusions:
- D-box receptor binding appears to be a universal requirement for Cdh1-mediated APC/C substrate recognition and degradation.
- Alternative or incomplete degron definitions may exist for APC/C substrates.
- This finding refines our understanding of cell cycle control and protein turnover.
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