Mechanisms of mutagenesis: DNA replication in the presence of DNA damage

Binyan Liu1, Qizhen Xue1, Yong Tang1

  • 1Institute of Toxicology, College of Preventive Medicine, Third Military Medical University, Chongqing, PR China.

Insights

Environmental mutagens cause DNA damage, leading to mutations and diseases like cancer. This review explores how DNA damage affects replication fidelity and mutagenesis in both single DNA polymerases and complex DNA replisomes.

Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • Environmental mutagens induce DNA damage, which can lead to mutations and diseases such as cancer.
  • DNA replication is a critical process susceptible to damage, impacting cellular health.
  • Understanding mutagenesis mechanisms is crucial for disease prevention and treatment.

Purpose of the Study:

  • To review the molecular mechanisms of mutagenesis arising from DNA damage during DNA replication.
  • To compare mutagenesis mechanisms at the single DNA polymerase level and the complex DNA replisome level.
  • To discuss the role of translesion DNA synthesis in bypassing DNA damage.

Main Methods:

  • Review of existing literature on DNA replication and mutagenesis.
  • Analysis of mechanisms in various model organisms (bacteriophage T7, T4, Sulfolobus solfataricus, Escherichia coli, yeast, human).
  • Inclusion of recent findings using new methods to investigate DNA damage bypass in replisomes.

Main Results:

  • DNA damage affects single DNA polymerase replication by reducing fidelity, causing frameshift mutations, or blocking replication.
  • The DNA replisome's protein interactions and accessory proteins can lead to varied mutagenesis outcomes.
  • New techniques allow investigation into how replisomes from different organisms and human cell extracts handle DNA damage bypass.

Conclusions:

  • Mutagenesis mechanisms differ significantly between single DNA polymerases and complex DNA replisomes.
  • Investigating DNA damage replication and bypass is essential for understanding cancer and other diseases.
  • Translesion DNA synthesis plays a key role in navigating DNA damage during replication.

Related Concept Videos

Spontaneous and Induced Mutations01:30

Spontaneous and Induced Mutations

Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).
2.8K
Overview of DNA Repair02:25

Overview of DNA Repair

In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage.
Chemically...
34.8K
Overview of DNA Repair02:25

Overview of DNA Repair

10.4K
DNA Damage can Stall the Cell Cycle02:36

DNA Damage can Stall the Cell Cycle

In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
10.3K
DNA Damage Can Stall the Cell Cycle02:36

DNA Damage Can Stall the Cell Cycle

In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
3.3K
The DNA Replication Fork01:02

The DNA Replication Fork

An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication...
42.7K