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Updated: Mar 20, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Mechanisms of mutagenesis: DNA replication in the presence of DNA damage
Binyan Liu1, Qizhen Xue1, Yong Tang1
1Institute of Toxicology, College of Preventive Medicine, Third Military Medical University, Chongqing, PR China.
Abstract:
Environmental mutagens cause DNA damage that disturbs replication and produces mutations, leading to cancer and other diseases. We discuss mechanisms of mutagenesis resulting from DNA damage, from the level of DNA replication by a single polymerase to the complex DNA replisome of some typical model organisms (including bacteriophage T7, T4, Sulfolobus solfataricus, Escherichia coli, yeast and human). For a single DNA polymerase, DNA damage can affect replication in three major ways: reducing replication fidelity, causing frameshift mutations, and blocking replication. For the DNA replisome, protein interactions and the functions of accessory proteins can yield rather different results even with a single DNA polymerase. The mechanism of mutation during replication performed by the DNA replisome is a long-standing question. Using new methods and techniques, the replisomes of certain organisms and human cell extracts can now be investigated with regard to the bypass of DNA damage. In this review, we consider the molecular mechanism of mutagenesis resulting from DNA damage in replication at the levels of single DNA polymerases and complex DNA replisomes, including translesion DNA synthesis.
Insights
Environmental mutagens cause DNA damage, leading to mutations and diseases like cancer. This review explores how DNA damage affects replication fidelity and mutagenesis in both single DNA polymerases and complex DNA replisomes.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Environmental mutagens induce DNA damage, which can lead to mutations and diseases such as cancer.
- DNA replication is a critical process susceptible to damage, impacting cellular health.
- Understanding mutagenesis mechanisms is crucial for disease prevention and treatment.
Purpose of the Study:
- To review the molecular mechanisms of mutagenesis arising from DNA damage during DNA replication.
- To compare mutagenesis mechanisms at the single DNA polymerase level and the complex DNA replisome level.
- To discuss the role of translesion DNA synthesis in bypassing DNA damage.
Main Methods:
- Review of existing literature on DNA replication and mutagenesis.
- Analysis of mechanisms in various model organisms (bacteriophage T7, T4, Sulfolobus solfataricus, Escherichia coli, yeast, human).
- Inclusion of recent findings using new methods to investigate DNA damage bypass in replisomes.
Main Results:
- DNA damage affects single DNA polymerase replication by reducing fidelity, causing frameshift mutations, or blocking replication.
- The DNA replisome's protein interactions and accessory proteins can lead to varied mutagenesis outcomes.
- New techniques allow investigation into how replisomes from different organisms and human cell extracts handle DNA damage bypass.
Conclusions:
- Mutagenesis mechanisms differ significantly between single DNA polymerases and complex DNA replisomes.
- Investigating DNA damage replication and bypass is essential for understanding cancer and other diseases.
- Translesion DNA synthesis plays a key role in navigating DNA damage during replication.
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