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Updated: Mar 20, 2026

Detection and Quantitation of Label-Retaining Cells in Mouse Incisors using a 3D Reconstruction Approach after Tissue Clearing
Published on: June 10, 2022
Mouse Label-Retaining Cells Are Molecularly and Functionally Distinct From Reserve Intestinal Stem Cells
Ning Li1, Angela Nakauka-Ddamba1, John Tobias2
1Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Label-retaining cells (LRCs) in the intestine are distinct from reserve intestinal stem cells (ISCs). LRCs function as progenitor cells, while reserve ISCs maintain quiescent stem cell activity.
Area of Science:
- Gastroenterology
- Stem Cell Biology
- Regenerative Medicine
Background:
- Intestinal homeostasis and regeneration involve reserve intestinal stem cells (ISCs) and actively proliferative ISCs.
- Label-retaining cells (LRCs) are dormant stem cells found in various tissues, including the intestine, and share properties with reserve ISCs.
- Previous studies identified putative reserve ISCs using methods like CreER insertions and DNA label retention.
Purpose of the Study:
- To investigate the relationship between label-retaining cells (LRCs) and reserve intestinal stem cells (ISCs) in the mouse intestine.
- To compare the molecular and functional characteristics of LRCs and reporter allele-marked reserve ISCs.
Main Methods:
- Utilized mouse models including Lgr5-EGFP-IRESCreERT2, Bmi1-CreERT2, Hopx-CreERT2, and TRE-H2BGFP::Hopx-CreERT2::lox-stop-lox-tdTomato.
- Purified intestinal epithelial cell populations for comparative analysis.
- Employed histologic flow cytometry, functional assays, and single-cell gene expression analysis to characterize cell populations.
Main Results:
- Label-retaining cells (LRCs) exhibited dynamic cellular composition over time.
- Short-term LRCs showed progenitor cell properties, differentiating into Paneth or enteroendocrine lineages while retaining stem cell activity.
- Long-term LRCs lost stem cell activity and comprised terminally differentiated Paneth cells; reserve ISCs marked by HopxCreER were quiescent with active stem cell function.
Conclusions:
- Label-retaining cells (LRCs) are molecularly and functionally distinct from reporter-marked reserve intestinal stem cells (ISCs).
- This distinction provides a foundation for future research into the complex relationships among different intestinal stem cell populations.
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