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Updated: Mar 19, 2026

Identification of MyoD Interactome Using Tandem Affinity Purification Coupled to Mass Spectrometry
Published on: May 17, 2016
MYC interaction with the tumor suppressive SWI/SNF complex member INI1 regulates transcription and cellular
Angelina Stojanova1,2, William B Tu1,2, Romina Ponzielli2
1a Department of Medical Biophysics , Faculty of Medicine, University of Toronto , Toronto , Ontario , Canada.
Abstract:
MYC is a key driver of cellular transformation and is deregulated in most human cancers. Studies of MYC and its interactors have provided mechanistic insight into its role as a regulator of gene transcription. MYC has been previously linked to chromatin regulation through its interaction with INI1 (SMARCB1/hSNF5/BAF47), a core member of the SWI/SNF chromatin remodeling complex. INI1 is a potent tumor suppressor that is inactivated in several types of cancers, most prominently as the hallmark alteration in pediatric malignant rhabdoid tumors. However, the molecular and functional interaction of MYC and INI1 remains unclear. Here, we characterize the MYC-INI1 interaction in mammalian cells, mapping their minimal binding domains to functionally significant regions of MYC (leucine zipper) and INI1 (repeat motifs), and demonstrating that the interaction does not interfere with MYC-MAX interaction. Protein-protein interaction network analysis expands the MYC-INI1 interaction to the SWI/SNF complex and a larger network of chromatin regulatory complexes. Genome-wide analysis reveals that the DNA-binding regions and target genes of INI1 significantly overlap with those of MYC. In an INI1-deficient rhabdoid tumor system, we observe that with re-expression of INI1, MYC and INI1 bind to common target genes and have opposing effects on gene expression. Functionally, INI1 re-expression suppresses cell proliferation and MYC-potentiated transformation. Our findings thus establish the antagonistic roles of the INI1 and MYC transcriptional regulators in mediating cellular and oncogenic functions.
Insights
The MYC oncogene and INI1 tumor suppressor have opposing roles in gene regulation and cell growth. Re-expressing INI1 suppresses MYC-driven cancer cell proliferation and transformation.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- MYC is a crucial oncogene driving cellular transformation and is frequently deregulated in human cancers.
- INI1 (SMARCB1) is a tumor suppressor and core component of the SWI/SNF chromatin remodeling complex, inactivated in malignant rhabdoid tumors.
- The precise molecular and functional interplay between MYC and INI1 remains incompletely understood.
Purpose of the Study:
- To elucidate the molecular interaction between MYC and INI1.
- To investigate the functional consequences of the MYC-INI1 interaction in cancer, particularly in INI1-deficient contexts.
- To define the antagonistic roles of MYC and INI1 in cellular and oncogenic functions.
Main Methods:
- Characterization of MYC-INI1 protein-protein interactions and mapping of binding domains in mammalian cells.
- Protein-protein interaction network analysis to contextualize MYC-INI1 within chromatin regulatory complexes.
- Genome-wide analysis of DNA-binding regions and target genes for MYC and INI1.
- Functional studies in an INI1-deficient rhabdoid tumor model with INI1 re-expression.
Main Results:
- The minimal binding domains for MYC and INI1 interaction were mapped to functionally relevant regions, without disrupting MYC-MAX interaction.
- MYC and INI1 share significant overlap in DNA-binding regions and target genes, indicating coordinated or opposing regulatory roles.
- Re-expression of INI1 in INI1-deficient rhabdoid tumors led to MYC and INI1 binding common target genes with opposing effects on gene expression.
- INI1 re-expression functionally suppressed cell proliferation and MYC-driven transformation.
Conclusions:
- MYC and INI1 engage in a direct molecular interaction with distinct binding domains.
- MYC and INI1 exhibit antagonistic transcriptional and functional roles in cellular processes and oncogenesis.
- INI1 acts as a tumor suppressor by counteracting MYC's oncogenic activities, offering potential therapeutic insights.
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