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Related Concept Videos

Labeling DNA Probes03:31

Labeling DNA Probes

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DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
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Fluorescence in situ hybridization, or FISH, was developed in the early 1980s and has quickly become one of the most widely used techniques in cytogenetics. Labeled probes are used to bind complementary DNA or RNA sequences on a chromosome or in a region within a cell. Earlier, the probes could only be obtained by cloning or reverse transcription of a DNA template. Currently, the probe oligonucleotides can be synthesized synthetically. Additionally, with the advancement of optical techniques,...
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Proteins are involved in several cellular processes and biochemical reactions. Analyzing a specific protein of interest requires it to be isolated from the other proteins in the cell. This is achieved by overexpressing the specific gene in a suitable host to produce large quantities of the target protein. A tag or label is recombined with the gene to produce a fusion protein containing the target protein and the tag. The tags on these fusion proteins can then be used for easy detection and...
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Immunoelectron microscopy utilizes immunogold labeling of endogenous proteins with specific antibodies to detect and localize these proteins in cells and tissues. The procedure provides insights into the distribution and quantification of protein under different stimulation conditions offering clues about their functions. Conjugating highly electron-dense gold particles with primary or secondary antibodies allow antigen detection on and within cells, with high resolution and specificity.
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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
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Genetically-encoded Molecular Probes to Study G Protein-coupled Receptors
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Bioconjugation Methods for Coupling Targeting Ligands with Fluorescent Dyes.

Xiaoxi Ling1

  • 1Department of Radiology, University of Pittsburgh, Suite 452G, 100 Technology Drive, Pittsburgh, PA, 15219, USA. lingx@upmc.edu.

Methods in Molecular Biology (Clifton, N.J.)
|June 11, 2016
PubMed
Summary

Researchers explore bioconjugation methods for creating targeted fluorescent probes. These probes visualize molecular processes in cells and living systems, enhancing imaging sensitivity and resolution.

Keywords:
Amide couplingBioconjugationClick chemistryCoupling reactionFluorescent probeHuisgen cycloadditionInverse electron demand Diels–Alder cycloadditionMichael additionMolecular imagingSuzuki couplingTargetedThiol coupling

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Area of Science:

  • Molecular imaging
  • Bioconjugation chemistry
  • Fluorescence microscopy

Background:

  • Targeted molecular imaging probes are crucial for visualizing specific molecular processes in biological systems.
  • Fluorescent probes offer high sensitivity and resolution for cellular and in vivo imaging.
  • Conventional probe development relies on covalently linking targeting ligands to fluorescent dyes via bioconjugation.

Purpose of the Study:

  • To review and describe common bioconjugation strategies for developing targeted fluorescent probes.
  • To highlight advancements in coupling techniques beyond traditional methods.

Main Methods:

  • Discussion of traditional bioconjugation techniques, including amide and thiol coupling.
  • Overview of modern coupling reactions, such as metal-catalyzed coupling.
  • Introduction to catalyst-free cycloaddition reactions for probe synthesis.

Main Results:

  • The study outlines a range of bioconjugation methods applicable to fluorescent probe development.
  • It covers both established and emerging chemical strategies for probe construction.

Conclusions:

  • Effective bioconjugation is key to advancing targeted fluorescent molecular imaging.
  • Diverse chemical approaches enable the synthesis of sophisticated probes for biological research.