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Published on: June 9, 2023
PI3K/AKT Signaling Regulates H3K4 Methylation in Breast Cancer
Jennifer M Spangle1, Koen M Dreijerink2, Anna C Groner2
1Department of Cancer Biology, Dana Farber Cancer Institute, 44 Binney Street, Boston, MA 02115, USA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 44 Binney Street, Boston, MA 02115, USA.
Abstract:
Post-translational histone H3 modifications regulate transcriptional competence. The mechanisms by which the epigenome is regulated in response to oncogenic signaling remain unclear. Here we show that H3K4me3 is increased in breast tumors driven by an activated PIK3CA allele and that inhibition of PI3K/AKT signaling reduces promoter-associated H3K4me3 in human breast cancer cells. We show that the H3K4 demethylase KDM5A is an AKT target and that phosphorylation of KDM5A regulates its nuclear localization and promoter occupancy. Supporting a role for KDM5A in mediating PI3K/AKT transcriptional effects, the decreased expression in response to AKT inhibition of a subset of cell-cycle genes associated with poor clinical outcome is blunted by KDM5A silencing. Our data identify a mechanism by which PI3K/AKT signaling modulates the cancer epigenome through controlling H3K4 methylation and suggest that KDM5A subcellular localization and genome occupancy may be pharmacodynamic markers of the activity of PI3K/AKT inhibitors currently in clinical development.
Insights
Activating PIK3CA signaling increases H3K4me3 in breast tumors. PI3K/AKT pathway inhibition reduces this mark by targeting KDM5A, a histone demethylase, revealing a new epigenetic mechanism in cancer.
Area of Science:
- Epigenetics
- Molecular Oncology
- Cancer Biology
Background:
- Post-translational histone modifications, particularly histone H3 modifications, are crucial regulators of gene transcription.
- The precise mechanisms governing epigenome regulation in response to oncogenic signaling, such as that driven by PIK3CA, are not fully understood.
- Understanding these mechanisms is vital for developing targeted cancer therapies.
Purpose of the Study:
- To elucidate the role of PI3K/AKT signaling in regulating histone H3 lysine 4 trimethylation (H3K4me3) in breast cancer.
- To investigate the involvement of the H3K4 demethylase KDM5A in mediating the transcriptional effects of PI3K/AKT signaling.
- To identify potential pharmacodynamic markers for PI3K/AKT inhibitors.
Main Methods:
- Analysis of H3K4me3 levels in breast tumors with activated PIK3CA.
- Assessment of PI3K/AKT signaling inhibition on promoter-associated H3K4me3 in human breast cancer cells.
- Investigation of KDM5A as an AKT target, including its phosphorylation, nuclear localization, and promoter occupancy.
- Evaluation of KDM5A's role in regulating cell-cycle gene expression upon AKT inhibition using KDM5A silencing.
Main Results:
- H3K4me3 is elevated in breast tumors driven by activated PIK3CA.
- Inhibition of PI3K/AKT signaling leads to a reduction in promoter-associated H3K4me3 in breast cancer cells.
- KDM5A was identified as a direct AKT target, with its phosphorylation regulating its subcellular localization and promoter binding.
- Silencing KDM5A partially reversed the effect of AKT inhibition on the expression of specific cell-cycle genes linked to poor clinical outcomes.
Conclusions:
- PI3K/AKT signaling modulates the cancer epigenome by controlling H3K4 methylation, with KDM5A playing a key role.
- KDM5A's subcellular localization and genome occupancy serve as potential pharmacodynamic biomarkers for assessing PI3K/AKT inhibitor activity.
- This study reveals a novel epigenetic regulatory mechanism in cancer driven by PI3K/AKT signaling.
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