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Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
Published on: June 24, 2021
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Alternative splicing of DENND1A, a PCOS candidate gene, generates variant 2
Meng Kian Tee1, Mart Speek1, Balázs Legeza1
1Department of Pediatrics and the Center for Reproductive Sciences, University of California, San Francisco, United States.
Molecular and Cellular Endocrinology
|June 15, 2016
Summary
Polycystic ovary syndrome (PCOS) involves excess androgens. The DENND1A V2 variant, overexpressed in PCOS theca cells, increases androgen synthesis. Genetic variation near its unique exon in intron 20 does not explain this PCOS link.
Area of Science:
- Endocrinology
- Genetics
- Molecular Biology
Background:
- Polycystic ovary syndrome (PCOS) is a common endocrine disorder linked to hyperandrogenism and metabolic dysfunction.
- The DENND1A gene, implicated in PCOS, encodes two variants: V1 and V2.
- The V2 variant is overexpressed in androgen-producing theca cells of PCOS patients, correlating with increased androgen synthesis.
Purpose of the Study:
- To investigate the origin and regulation of the DENND1A V2 isoform in adrenal cells.
- To explore the role of genetic variation in intron 20 of DENND1A in PCOS pathogenesis.
- To determine if altered V2 expression in adrenal cells contributes to PCOS phenotypes.
Main Methods:
- Analysis of DENND1A V1 and V2 mRNA and protein expression in human adrenal NCI-H295A cells.
- Investigating V2 isoform generation via exonization of intronic sequences.
- Assessing the impact of V2 overexpression on CYP17A1 and CYP11A1 mRNA levels in adrenal cells.
- Genotyping and functional analysis of genetic variants in intron 20 of DENND1A.
Main Results:
- Human adrenal cells express both DENND1A V1 and V2 variants.
- The V2 isoform is generated through the exonization of intron 20 sequences, creating a unique exon 20A.
- Forced V2 expression in adrenal cells increased CYP17A1 and CYP11A1 mRNA abundance, mimicking PCOS theca cell behavior.
- Genetic variations in intron 20 showed no clear association with PCOS and did not consistently promote V2 transcript splicing.
Conclusions:
- The DENND1A V2 isoform is expressed in human adrenal cells and can influence androgen synthesis genes.
- Increased V2 expression in PCOS theca cells is unlikely due to genomic sequence variation in the studied intronic region.
- Further research is needed to elucidate the precise mechanisms regulating V2 expression in PCOS.
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