Different N-H⋯π inter-actions in two indole derivatives
Jamie R Kerr1, Laurent Trembleau1, John M D Storey1
1Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland.
This study details the synthesis and crystal structures of two novel indole derivatives. The research reveals that N-H⋯π bonds, not hydrogen bonds, are the primary intermolecular forces driving crystal packing in these compounds.
Area of Science:
- Organic Chemistry
- Crystallography
- Supramolecular Chemistry
Background:
- Indole derivatives are important scaffolds in medicinal chemistry.
- Understanding intermolecular interactions is crucial for crystal engineering and material design.
Purpose of the Study:
- To synthesize and characterize two novel indole derivatives.
- To elucidate the crystal structures and dominant intermolecular interactions of these compounds.
Main Methods:
- Single-crystal X-ray diffraction analysis.
- Structural analysis of intermolecular interactions (N-H⋯π, C-H⋯π, π-π stacking).
Main Results:
- The crystal structures of 6-isopropyl-3-(2-nitro-1-phenyl-eth-yl)-1H-indole and 2-(4-meth-oxy-phen-yl)-3-(2-nitro-1-phenyl-eth-yl)-1H-indole were determined.
- N-H⋯π bonds were identified as the dominant intermolecular interactions, leading to distinct packing motifs (chains and inversion dimers).
- C-H⋯π interactions contribute to crystal consolidation, while π-π stacking interactions are absent.
Conclusions:
- The study highlights the significant role of N-H⋯π interactions in the crystal packing of these indole derivatives.
- The findings provide insights into the structure-property relationships of indole-based compounds and inform crystal engineering strategies.
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