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Characterization of RON protein isoforms in pancreatic cancer: implications for biology and therapeutics
Jeffery Chakedis1, Randall French1, Michele Babicky1
1Department of Surgery, Division of Surgical Oncology, Moores Cancer Center, University of California, San Diego, La Jolla, CA, USA.
Abstract:
The RON tyrosine kinase receptor is under investigation as a novel target in pancreatic cancer. While RON mutations are uncommon, RON isoforms are produced in cancer cells via a variety of mechanisms. In this study we sought to: 1) characterize RON isoform expression in pancreatic cancer, 2) investigate mechanisms that regulate isoform expression, and 3) determine how various isoforms effect gene expression, oncogenic phenotypes and responses to RON directed therapies. We quantified RON transcripts in human pancreatic cancer and found expression levels 2500 fold that of normal pancreas with RON isoform expression comprising nearly 50% of total transcript. RNA seq studies revealed that the short form (sfRON) and P5P6 isoforms which have ligand independent activity, induce markedly different patterns of gene expression than wild type RON. We found that transcription of RON isoforms is regulated by promoter hypermethylation as the DNA demethylating agent 5-aza-2'-deoxycytidine decreased all RON transcripts in a subset of pancreatic cancer cell lines. The viability of sfRON-expressing HPDE cells was reduced by a RON specific small molecule inhibitor, while a therapeutic monoclonal antibody had no demonstrable effects. In summary, RON isoforms may comprise half of total RON transcript in human pancreatic cancer and their expression is regulated at least in part by promoter hypermethylation. RON isoforms activate distinct patterns of gene expression, have transforming activity and differential responses to RON directed therapies. These findings further our understanding of RON biology in pancreatic cancer and have implications for therapeutic strategies to target RON activity.
Insights
RON isoforms are highly expressed in pancreatic cancer, regulated by promoter hypermethylation. These isoforms drive distinct gene expression patterns and impact therapeutic responses, offering new targets for pancreatic cancer treatment.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- The RON tyrosine kinase receptor is implicated in cancer.
- RON mutations are rare, but isoforms are prevalent in cancer cells.
- Understanding RON isoform biology is crucial for pancreatic cancer therapy.
Purpose of the Study:
- Characterize RON isoform expression in pancreatic cancer.
- Investigate mechanisms regulating RON isoform expression.
- Determine the functional impact of RON isoforms on gene expression, oncogenic phenotypes, and therapy response.
Main Methods:
- Quantification of RON transcripts in human pancreatic cancer samples.
- RNA sequencing (RNA seq) to analyze gene expression patterns induced by RON isoforms.
- Treatment with a DNA demethylating agent (5-aza-2'-deoxycytidine) to assess regulation.
- Evaluation of cell viability using RON-specific inhibitors and antibodies.
Main Results:
- RON transcript levels were 2500-fold higher in pancreatic cancer than normal pancreas, with isoforms comprising nearly 50% of total transcript.
- Ligand-independent RON isoforms (sfRON, P5P6) induced distinct gene expression profiles compared to wild-type RON.
- Promoter hypermethylation was identified as a regulatory mechanism, with 5-aza-2'-deoxycytidine decreasing RON transcripts.
- A RON-specific inhibitor reduced viability in sfRON-expressing cells, while a monoclonal antibody showed no effect.
Conclusions:
- RON isoforms constitute a significant portion of RON transcripts in pancreatic cancer and are regulated by promoter hypermethylation.
- These isoforms exhibit transforming activity, alter gene expression, and respond differently to therapies.
- Findings provide insights into RON biology and suggest therapeutic strategies targeting RON activity in pancreatic cancer.
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