Related Experiment Video
Updated: Mar 19, 2026

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
Published on: July 19, 2019
Toward Hamiltonian Adaptive QM/MM: Accurate Solvent Structures Using Many-Body Potentials.
Jelle M Boereboom1, Raffaello Potestio2, Davide Donadio2,3,4,5
1Inorganic Chemistry and Catalysis group, Debye Institute for Nanomaterials Science, Utrecht University , Universiteitsweg 99, 3584 CG Utrecht, The Netherlands.
Adaptive quantum mechanical/molecular mechanical (QM/MM) methods now feature a Hamiltonian approach to accurately simulate chemistry in solution. This new scheme resolves boundary distortions, enabling precise vibrational spectra and dynamical properties calculations.
Area of Science:
- Computational Chemistry
- Multiscale Modeling
- Physical Chemistry
Background:
- Adaptive quantum mechanical (QM)/molecular mechanical (MM) methods are crucial for simulating chemistry in solution.
- Current adaptive QM/MM methods face challenges with structural distortions at the QM/MM boundary.
- Accurate modeling of solvent effects is essential for predicting molecular properties.
Purpose of the Study:
- To develop a novel Hamiltonian adaptive multiscale scheme for QM/MM simulations.
- To address and resolve the long-standing issue of structural distortions at the QM/MM interface.
- To enable accurate microcanonical adaptive QM/MM simulations for vibrational spectra and dynamical properties.
Main Methods:
- Implementation of a Hamiltonian adaptive multiscale scheme using many-body potentials.
- General adaptive expressions compatible with standard QM/MM embedding schemes.
- Application to a molecular system with two different molecular mechanics (MM) potentials and particle mesh Ewald for long-range interactions.
Main Results:
- The proposed Hamiltonian approach successfully eliminates structural distortions at the QM/MM boundary.
- Demonstrated energy conservation across the entire simulated system.
- Achieved accurate representation of solvent structure, even with different MM potentials.
Conclusions:
- The novel Hamiltonian adaptive multiscale scheme provides a robust solution for QM/MM simulations in solution.
- This method overcomes previous limitations, enabling reliable calculations of dynamical and spectral properties.
- The approach ensures both energy conservation and correct structural representation, advancing multiscale modeling capabilities.
More Related Videos
10:52Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
Published on: April 12, 2019
08:04Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids
Published on: May 27, 2020
Related Concept Videos
Intermolecular Forces
Chemical Shift: Internal References and Solvent Effects
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
Thermodynamic Potentials
Equilibrium Conditions for a Particle
To understand the concept of equilibrium, let us first consider the forces acting on an object. When different forces act on an object, they can...
Van der Waals Equation
First, the attractive forces between molecules, which are stronger at higher densities and reduce the pressure, are considered by adding to the pressure a term equal to the square of the molar density multiplied by a positive coefficient a. Second, the volume...
The Quantum-Mechanical Model of an Atom