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Updated: Jun 15, 2026

An Intestinal Gut Organ Culture System for Analyzing Host-Microbiota Interactions
Published on: June 30, 2021
A key genetic factor for fucosyllactose utilization affects infant gut microbiota development
Takahiro Matsuki1, Kana Yahagi1, Hiroshi Mori2
1Yakult Central Institute, 5-11 Izumi, Kunitachi-shi, Tokyo 186-8650, Japan.
Insights
Infant gut microbiota development is influenced by fucosyllactose (FL) utilization by Bifidobacteria. Breast milk
Area of Science:
- Microbiology
- Infant Health
- Metabolomics
Background:
- Gut microbiota development is crucial for infant health and host physiology.
- Factors influencing gut microbiota and their impact on metabolites are not well understood.
Purpose of the Study:
- To analyze gut microbiota development in infants during the first month of life.
- To investigate the role of human milk oligosaccharide utilization by Bifidobacteria.
Main Methods:
- Analysis of gut microbiota development in 27 infants.
- Investigation of fucosyllactose (FL) utilization by infant Bifidobacteria.
- Genome analysis to identify genetic factors for FL utilization.
Main Results:
- Identified three distinct clusters of gut microbiota development, transitioning to Bifidobacteriaceae dominance.
- Observed significant differences in FL utilization among infant Bifidobacteria.
- Found that FL-utilizing Bifidobacteria colonization is linked to altered infant gut metabolite profiles and microbiota composition.
- Identified an ABC transporter as a key genetic factor for FL utilization.
Conclusions:
- The ability of Bifidobacteria to utilize FL, present in breast milk, influences infant gut microbiota development.
- This interaction may have implications for infant health and potential therapeutic strategies.
Abstract:
Recent studies have demonstrated that gut microbiota development influences infants' health and subsequent host physiology. However, the factors shaping the development of the microbiota remain poorly understood, and the mechanisms through which these factors affect gut metabolite profiles have not been extensively investigated. Here we analyse gut microbiota development of 27 infants during the first month of life. We find three distinct clusters that transition towards Bifidobacteriaceae-dominant microbiota. We observe considerable differences in human milk oligosaccharide utilization among infant bifidobacteria. Colonization of fucosyllactose (FL)-utilizing bifidobacteria is associated with altered metabolite profiles and microbiota compositions, which have been previously shown to affect infant health. Genome analysis of infants' bifidobacteria reveals an ABC transporter as a key genetic factor for FL utilization. Thus, the ability of bifidobacteria to utilize FL and the presence of FL in breast milk may affect the development of the gut microbiota in infants, and might ultimately have therapeutic implications.
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