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Updated: Mar 19, 2026

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
Cilia gene mutations cause atrioventricular septal defects by multiple mechanisms
Ozanna Burnicka-Turek1, Jeffrey D Steimle2, Wenhui Huang3
1Departments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, IL 60637, USA, imoskowitz@uchicago.edu burnickatureko@uchicago.edu.
Deleterious mutations in cilia genes Dnah11 and Mks1 cause congenital heart defects, specifically atrioventricular septal defects (AVSDs), in mice. These mutations differentially impact left/right axis determination and heart development signaling.
Area of Science:
- Developmental Biology
- Genetics
- Cardiology
Background:
- Atrioventricular septal defects (AVSDs) represent a severe and common form of congenital heart disease (CHD).
- Cilia play critical roles in embryonic development, including left/right body axis determination and signaling pathways essential for heart formation.
Purpose of the Study:
- To identify genetic mutations causing AVSDs.
- To investigate the role of cilia genes in heart development and left/right axis formation.
- To elucidate the differential impact of cilia gene mutations on AVSDs and heterotaxy.
Main Methods:
- Whole-exome sequencing to identify mutations in mouse models.
- Generation of N-ethyl-N-nitrosourea-induced mouse mutant lines with heritable recessive AVSDs.
- Whole-genome transcriptional profiling of the second heart field (SHF).
Main Results:
- Deleterious mutations in cilia genes Dnah11 and Mks1 were identified in mouse lines with AVSDs.
- Dnah11 mutations caused AVSDs with heterotaxy but did not affect SHF Hedgehog (Hh) signaling.
- Mks1 mutations disrupted SHF Hh signaling and caused AVSDs without heterotaxy.
- SHF expression of cilia structural and signaling genes, but not motility genes, correlated with phenotypic outcomes.
Conclusions:
- Cilia gene mutations differentially affect left/right axis determination and SHF Hh signaling, leading to distinct AVSD phenotypes.
- A two-step model of cilia function accurately predicts the observed AVSD and heterotaxy patterns.
- Cilia gene mutations are implicated in both syndromic and non-syndromic AVSDs in humans, providing a predictive model for phenotypic consequences.
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