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ACT1-CUP1 Assays Determine the Substrate-Specific Sensitivities of Spliceosomal Mutants in Budding Yeast
Published on: June 30, 2022
Mutant allele of rna14 in fission yeast affects pre-mRNA splicing
Sudhanshu Yadav1, Amit Sonkar, Nafees Ahamad
1Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow 226 031, India.shakil_ahmed@cdri.res.in.
Abstract:
Spliceosome and 3'-end processing complexes are necessary for the precursor mRNA (pre-mRNA) maturation. Spliceosome complex removes noncoding introns, while 3'-end processing involves in cleavage and addition of poly(A) tails to the nascent transcript. Rna14 protein in budding yeast has been implicated in cleavage and polyadenylation of mRNA in the nucleus but their role in the pre-mRNA splicing has not been studied. Here, we report the isolation of a mutant allele of rna14 in fission yeast, Schizosaccharomyces pombe that exhibits reduction in protein level of Chk1 at the nonpermissive temperature, primarily due to the defects in posttranscriptional processing. Reverse transcriptase-polymerase chain reaction analysis reveals defective splicing of the chk1(+) transcript at the nonpermissive temperature. Apart from chk1(+), the splicing of some other genes were also found to be defective at the nonpermissive temperature suggesting that Rna14 might be involved in pre-mRNA splicing. Subsequently, genetic interaction of Rna14 with prp1 and physical interactions with Prp28 suggest that the Rna14 might be part of a larger protein complex responsible for the pre-mRNA maturation.
Insights
The Rna14 protein in fission yeast is crucial for precursor messenger RNA (pre-mRNA) splicing, impacting Chk1 protein levels. This study reveals Rna14
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Precursor mRNA (pre-mRNA) maturation involves spliceosome and 3'-end processing complexes.
- Rna14 protein in budding yeast is known to be involved in mRNA cleavage and polyadenylation.
- The role of Rna14 in pre-mRNA splicing remains uninvestigated.
Purpose of the Study:
- To investigate the function of Rna14 in pre-mRNA processing in fission yeast.
- To determine if Rna14 plays a role in pre-mRNA splicing.
Main Methods:
- Isolation and characterization of a mutant rna14 allele in Schizosaccharomyces pombe.
- Reverse transcriptase-polymerase chain reaction (RT-PCR) analysis to assess gene splicing.
- Genetic interaction studies with prp1 and physical interaction studies with Prp28.
Main Results:
- A mutant rna14 allele caused reduced Chk1 protein levels at nonpermissive temperatures due to posttranscriptional processing defects.
- RT-PCR analysis showed defective splicing of the chk1(+) transcript and other genes.
- Rna14 demonstrated genetic interaction with prp1 and physical interaction with Prp28.
Conclusions:
- Rna14 is involved in pre-mRNA splicing in fission yeast.
- Rna14 may be a component of a larger protein complex essential for pre-mRNA maturation.
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