Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Protein Networks02:26

Protein Networks

4.7K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.7K
Protein Networks02:26

Protein Networks

2.9K
2.9K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Exogenous porcine blood polypeptide alleviates drought damage in wheat.

BMC plant biology·2026
Same author

EMF2b-1 regulates endosperm cell cycling through PRC2 recruitment in maize.

Genome biology·2026
Same author

The Phase Structure and Properties of Polyurethanes Based on Polycaprolactone Block Copolymers Dangling Side-Chain PEG.

Biomacromolecules·2026
Same author

Evolutionary Changes of <i>GT1</i> Provide Insights Into the Adaptation of Butterflies to Plant Feeding.

Ecology and evolution·2025
Same author

Overexpression of modified Bacillus thuringiensis toxin Cyt2Aa in wheat strongly enhances aphid resistance.

Journal of integrative plant biology·2025
Same author

Chromatin state analysis for regulatory features of JAZ family genes in Arabidopsis thaliana.

Plant science : an international journal of experimental plant biology·2025
Same journal

Development of CypriSSR: a genome-wide, chromosome-level microsatellite database for multiple cyprinidae species.

Database : the journal of biological databases and curation·2026
Same journal

KitBase Expanded: An Integrated Genomic and Phenotypic Resource for 3,268 Fast-Neutron-Irradiated Rice Mutants.

Database : the journal of biological databases and curation·2026
Same journal

PhaLP 2.0: extending the community-oriented phage lysin database with a SUBLYME pipeline for metagenomic discovery.

Database : the journal of biological databases and curation·2026
Same journal

A similarity metric, rubric, and unified hierarchy for biomedical publication types and study designs.

Database : the journal of biological databases and curation·2026
Same journal

GUTAID: a curated database linking gut microbial antigens to autoimmune mechanisms.

Database : the journal of biological databases and curation·2026
Same journal

Rosetta Statements: simplifying FAIR knowledge graph construction with a user-centred approach.

Database : the journal of biological databases and curation·2026
See all related articles

Related Experiment Video

Updated: Mar 18, 2026

Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers
07:10

Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers

Published on: March 4, 2021

5.1K

SorghumFDB: sorghum functional genomics database with multidimensional network analysis.

Tian Tian1, Qi You1, Liwei Zhang1

  • 1State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

Database : the Journal of Biological Databases and Curation
|June 30, 2016
PubMed
Summary
This summary is machine-generated.

Sorghum functional genomics database (SorghumFDB) was developed to aid research on this important bioenergy crop. It integrates diverse genomic data and biological networks to identify key regulators in metabolic pathways like lignin biosynthesis.

More Related Videos

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
08:09

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

20.6K
Microarray Analysis for Saccharomyces cerevisiae
13:17

Microarray Analysis for Saccharomyces cerevisiae

Published on: April 7, 2011

14.2K

Related Experiment Videos

Last Updated: Mar 18, 2026

Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers
07:10

Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers

Published on: March 4, 2021

5.1K
Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
08:09

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

20.6K
Microarray Analysis for Saccharomyces cerevisiae
13:17

Microarray Analysis for Saccharomyces cerevisiae

Published on: April 7, 2011

14.2K

Area of Science:

  • Plant Genomics
  • Bioinformatics
  • Functional Genomics

Background:

  • Sorghum (Sorghum bicolor [L.] Moench) is a globally important crop known for its heat and drought tolerance, C4 photosynthesis, and bioenergy potential.
  • The release of the sorghum genome sequence necessitates a dedicated platform for functional genomics data mining.

Purpose of the Study:

  • To construct a comprehensive sorghum functional genomics database (SorghumFDB).
  • To integrate diverse genomic data and biological relationships for enhanced data mining and analysis.

Main Methods:

  • Collected and integrated sorghum genomic data and functional annotations.
  • Developed SorghumFDB, including gene family classifications, annotations, miRNA data, orthologs, and a genome browser.
  • Constructed a dynamic network of multidimensional biological relationships using co-expression, protein-protein interactions, and miRNA-target data.

Main Results:

  • SorghumFDB provides integrated knowledge on various sorghum gene families and functional information.
  • A multidimensional biological network was established, linking co-expression, protein interactions, and miRNA-target data.
  • Combined network, gene set enrichment, and motif analyses identified key regulators in metabolic pathways, including lignin biosynthesis.

Conclusions:

  • SorghumFDB serves as a valuable resource for sorghum functional genomics research.
  • The integrated network analysis facilitates the discovery of key regulatory genes in important plant biological processes.
  • This platform supports research into sorghum's potential as a bioenergy crop.