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Updated: Mar 18, 2026

Amplification of Near Full-length HIV-1 Proviruses for Next-Generation Sequencing
Published on: October 16, 2018
HIV gp120 sequence variability associated with HAND in Hispanic Women
Krystal Colón1, Fabián Vázquez-Santiago2, Vanessa Rivera-Amill2
1Department of Microbiology and Medical Zoology, University of Puerto Rico Medical Sciences Campus, San Juan, PR.
HIV-1 envelope gene sequences in the C2V4 region correlate with neurocognitive disorders (HAND). Less sequence diversity in HIV-1 env genes is linked to normal cognition, while greater diversity suggests cognitive impairment.
Area of Science:
- Virology
- Neuroscience
- Immunology
Background:
- HIV-1 variants exhibit diverse tropisms, influencing neuropathologies.
- The relationship between specific viral env sequences and neuropathology requires further elucidation.
Purpose of the Study:
- To investigate if unique HIV-1 env gene sequences correlate with neurocognitive status.
- To determine the association between HIV-1 envelope gene sequence changes and cognition in infected individuals.
Main Methods:
- Viral RNA was extracted from peripheral blood mononuclear cells (PBMCs) of HIV-1 infected Hispanic women.
- Subjects were characterized for HIV-associated neurocognitive disorders (HAND).
Main Results:
- Increased sequence diversity in the C2V4 region of HIV gp120 correlated with cognition status.
- Subjects with normal cognition had less sequence diversity compared to those with cognitive impairment.
- Differences in V3 and V4 loop charges and N-glycosylation of the V4 region were observed.
Conclusions:
- The genetic signature within the C2V4 region of HIV env may contribute to HAND pathogenesis.
- HIV env sequence characteristics can offer prognostic value for assessing neurocognitive status in HIV-positive individuals, especially with milder HAND forms.
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