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Updated: Mar 18, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Epigenetic therapy in gastrointestinal cancer: the right combination
Eihab Abdelfatah1, Zachary Kerner1, Nainika Nanda2
1Department of Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Abstract:
Epigenetics is a relatively recent field of molecular biology that has arisen over the past 25 years. Cancer is now understood to be a disease of widespread epigenetic dysregulation that interacts extensively with underlying genetic mutations. The development of drugs targeting these processes has rapidly progressed; with several drugs already FDA approved as first-line therapy in hematological malignancies. Gastrointestinal (GI) cancers possess high degrees of epigenetic dysregulation, exemplified by subtypes such as CpG island methylator phenotype (CIMP), and the potential benefit of epigenetic therapy in these cancers is evident. The application of epigenetic drugs in solid tumors, including GI cancers, is just emerging, with increased understanding of the cancer epigenome. In this review, we provide a brief overview of cancer epigenetics and the epigenetic targets of therapy including deoxyribonucleic acid (DNA) methylation, histone modifications, and chromatin remodeling. We discuss the epigenetic drugs currently in use, with a focus on DNA methyltransferase (DNMT) and histone deacetylase (HDAC) inhibitors, and explain the pharmacokinetic and mechanistic challenges in their application. We present the strategies employed in incorporating these drugs into the treatment of GI cancers, and explain the concept of the cancer stem cell in epigenetic reprogramming and reversal of chemo resistance. We discuss the most promising combination strategies in GI cancers including: (1) epigenetic sensitization to radiotherapy, (2) epigenetic sensitization to cytotoxic chemotherapy, and (3) epigenetic immune modulation and priming for immune therapy. Finally, we present preclinical and clinical trial data employing these strategies thus far in various GI cancers including colorectal, esophageal, gastric, and pancreatic cancer.
Insights
Epigenetic dysregulation drives cancer, and epigenetic drugs targeting DNA methylation and histone modification show promise for gastrointestinal (GI) cancers. Combination strategies are emerging to improve treatment efficacy.
Area of Science:
- Molecular biology
- Cancer epigenetics
- Epigenetic drug development
Background:
- Cancer involves widespread epigenetic dysregulation interacting with genetic mutations.
- Epigenetic drugs are FDA-approved for hematological malignancies.
- Gastrointestinal cancers exhibit significant epigenetic dysregulation, like CIMP, indicating therapeutic potential.
Purpose of the Study:
- Review cancer epigenetics and therapeutic targets (DNA methylation, histone modifications, chromatin remodeling).
- Discuss current epigenetic drugs (DNMT and HDAC inhibitors), their challenges, and application strategies in GI cancers.
- Explore cancer stem cells, epigenetic reprogramming, and combination strategies for GI cancer treatment.
Main Methods:
- Overview of epigenetic mechanisms and drug targets.
- Discussion of DNA methyltransferase (DNMT) and histone deacetylase (HDAC) inhibitors.
- Presentation of combination strategies and supporting preclinical/clinical data.
Main Results:
- Epigenetic therapy is emerging in solid tumors, including GI cancers.
- Strategies include epigenetic sensitization to radiotherapy, chemotherapy, and immunotherapy.
- Preclinical and clinical data support these combination approaches in various GI cancers.
Conclusions:
- Epigenetic drugs offer a promising avenue for treating GI cancers.
- Combination therapies are key to overcoming resistance and enhancing treatment outcomes.
- Further research into epigenetic reprogramming and combination strategies is crucial for advancing GI cancer care.
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