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Updated: Mar 18, 2026

Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes
Published on: April 4, 2025
Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response
Alicia K Byrd1, Boris L Zybailov2, Leena Maddukuri1
1From the Departments of Biochemistry and Molecular Biology and.
Abstract:
Cells engage numerous signaling pathways in response to oxidative stress that together repair macromolecular damage or direct the cell toward apoptosis. As a result of DNA damage, mitochondrial DNA or nuclear DNA has been shown to enter the cytoplasm where it binds to "DNA sensors," which in turn initiate signaling cascades. Here we report data that support a novel signaling pathway in response to oxidative stress mediated by specific guanine-rich sequences that can fold into G-quadruplex DNA (G4DNA). In response to oxidative stress, we demonstrate that sequences capable of forming G4DNA appear at increasing levels in the cytoplasm and participate in assembly of stress granules. Identified proteins that bind to endogenous G4DNA in the cytoplasm are known to modulate mRNA translation and participate in stress granule formation. Consistent with these findings, stress granule formation is known to regulate mRNA translation during oxidative stress. We propose a signaling pathway whereby cells can rapidly respond to DNA damage caused by oxidative stress. Guanine-rich sequences that are excised from damaged genomic DNA are proposed to enter the cytoplasm where they can regulate translation through stress granule formation. This newly proposed role for G4DNA provides an additional molecular explanation for why such sequences are prevalent in the human genome.
Insights
Oxidative stress triggers DNA damage, leading to G-quadruplex DNA (G4DNA) in the cytoplasm. This G4DNA regulates mRNA translation via stress granules, offering a novel cellular response mechanism.
Area of Science:
- Molecular Biology
- Cellular Signaling
- Genomics
Background:
- Cells activate signaling pathways to manage oxidative stress and DNA damage.
- Cytoplasmic DNA, from nuclear or mitochondrial sources, can trigger signaling cascades via DNA sensors.
Purpose of the Study:
- To investigate a novel signaling pathway involving G-quadruplex DNA (G4DNA) in response to oxidative stress.
- To elucidate the role of G4DNA in cellular responses to DNA damage.
Main Methods:
- Analysis of G4DNA localization and abundance under oxidative stress conditions.
- Identification of proteins interacting with cytoplasmic G4DNA.
- Assessment of stress granule formation and its regulation by G4DNA.
Main Results:
- Guanine-rich sequences forming G4DNA increase in the cytoplasm during oxidative stress.
- Cytoplasmic G4DNA interacts with proteins that modulate mRNA translation and stress granule assembly.
- Stress granule formation, regulated by G4DNA, impacts mRNA translation during oxidative stress.
Conclusions:
- A novel signaling pathway is proposed where excised G4DNA from damaged DNA enters the cytoplasm.
- Cytoplasmic G4DNA regulates translation through stress granule formation in response to oxidative stress.
- This highlights a new function for G4DNA in cellular defense against DNA damage and explains its genomic prevalence.
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