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Published on: October 5, 2012
Conformational Heterogeneity of Bax Helix 9 Dimer for Apoptotic Pore Formation
Chenyi Liao1, Zhi Zhang2, Justin Kale3,4
1Department of Chemistry, University of Vermont, Burlington, VT 05405, USA.
Abstract:
Helix α9 of Bax protein can dimerize in the mitochondrial outer membrane (MOM) and lead to apoptotic pores. However, it remains unclear how different conformations of the dimer contribute to the pore formation on the molecular level. Thus we have investigated various conformational states of the α9 dimer in a MOM model - using computer simulations supplemented with site-specific mutagenesis and crosslinking of the α9 helices. Our data not only confirmed the critical membrane environment for the α9 stability and dimerization, but also revealed the distinct lipid-binding preference of the dimer in different conformational states. In our proposed pathway, a crucial iso-parallel dimer that mediates the conformational transition was discovered computationally and validated experimentally. The corroborating evidence from simulations and experiments suggests that, helix α9 assists Bax activation via the dimer heterogeneity and interactions with specific MOM lipids, which eventually facilitate proteolipidic pore formation in apoptosis regulation.
Insights
Bax protein's helix α9 dimerizes in the mitochondrial outer membrane, forming pores. Distinct dimer conformations and lipid interactions drive this process, crucial for apoptosis regulation.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Biology
Background:
- Bax protein's helix α9 dimerizes at the mitochondrial outer membrane (MOM), contributing to apoptotic pore formation.
- The precise molecular mechanisms by which different dimer conformations influence pore formation remain poorly understood.
Purpose of the Study:
- To investigate the conformational states of the Bax helix α9 dimer within a MOM model.
- To elucidate the role of dimer conformation and lipid interactions in Bax-mediated apoptosis.
Main Methods:
- Computational simulations of Bax α9 dimer in a MOM model.
- Site-specific mutagenesis and crosslinking of α9 helices.
- Experimental validation of computational findings.
Main Results:
- Confirmed the importance of the membrane environment for α9 stability and dimerization.
- Revealed distinct lipid-binding preferences for different dimer conformations.
- Discovered and experimentally validated a crucial iso-parallel dimer mediating conformational transitions.
Conclusions:
- Bax helix α9 stability and dimerization are critical within the MOM.
- Dimer heterogeneity and specific MOM lipid interactions facilitate Bax activation and proteolipidic pore formation.
- This study provides molecular insights into apoptosis regulation by Bax.
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