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Updated: Mar 17, 2026

Forward Genetic Approaches in Chlamydia trachomatis
Published on: October 23, 2013
The Number, Organization, and Size of Polymorphic Membrane Protein Coding Sequences as well as the Most Conserved Pmp
Sarah Van Lent1, Heather Huot Creasy, Garry S A Myers
1Department of Animal Production, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.
Abstract:
Variation is a central trait of the polymorphic membrane protein (Pmp) family. The number of pmp coding sequences differs between Chlamydia species, but it is unknown whether the number of pmp coding sequences is constant within a Chlamydia species. The level of conservation of the Pmp proteins has previously only been determined for Chlamydia trachomatis. As different Pmp proteins might be indispensible for the pathogenesis of different Chlamydia species, this study investigated the conservation of Pmp proteins both within and across C. trachomatis,C. pneumoniae,C. abortus, and C. psittaci. The pmp coding sequences were annotated in 16 C. trachomatis, 6 C. pneumoniae, 2 C. abortus, and 16 C. psittaci genomes. The number and organization of polymorphic membrane coding sequences differed within and across the analyzed Chlamydia species. The length of coding sequences of pmpA,pmpB, and pmpH was conserved among all analyzed genomes, while the length of pmpE/F and pmpG, and remarkably also of the subtype pmpD, differed among the analyzed genomes. PmpD, PmpA, PmpH, and PmpA were the most conserved Pmp in C. trachomatis,C. pneumoniae,C. abortus, and C. psittaci, respectively. PmpB was the most conserved Pmp across the 4 analyzed Chlamydia species.
Insights
Polymorphic membrane proteins (Pmp) vary within and across Chlamydia species. PmpB is the most conserved Pmp across these species, while others show species-specific conservation patterns.
Area of Science:
- Microbiology
- Genomics
- Protein Science
Background:
- Polymorphic membrane proteins (Pmp) are key to Chlamydia pathogenesis.
- Pmp gene and protein conservation is largely uncharacterized across different Chlamydia species.
Purpose of the Study:
- To investigate the conservation of Pmp proteins within and across four Chlamydia species: C. trachomatis, C. pneumoniae, C. abortus, and C. psittaci.
- To determine if the number of pmp coding sequences is constant within a Chlamydia species.
Main Methods:
- Genome-wide annotation of pmp coding sequences.
- Comparative analysis of pmp gene number, organization, and protein length across 16 C. trachomatis, 6 C. pneumoniae, 2 C. abortus, and 16 C. psittaci genomes.
Main Results:
- Significant variation in the number and organization of pmp coding sequences was observed within and across the studied Chlamydia species.
- The length of pmpA, pmpB, and pmpH coding sequences were conserved across all analyzed genomes.
- The lengths of pmpE/F, pmpG, and pmpD subtypes varied among species, with PmpD showing remarkable length differences. PmpD, PmpA, PmpH, and PmpA were the most conserved Pmp in C. trachomatis, C. pneumoniae, C. abortus, and C. psittaci, respectively. PmpB was the most conserved Pmp across all four species.
Conclusions:
- The number and organization of Pmp coding sequences are not constant within Chlamydia species.
- Pmp protein conservation varies significantly both within and across Chlamydia species, with PmpB exhibiting the highest cross-species conservation.
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