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Genetic Variant Detection in the CALR gene using High Resolution Melting Analysis
Published on: August 26, 2020
Detection of oncogenic mutations in cervical carcinoma using method High Resolution Melting (HRM)
Abstract:
Oncogenic mutations in proto-oncogenes and tumor suppressor genes represent one of key events in cancerogenesis. In this study, we analysed mutation status in PIK3CA, KRAS and EGFR proto-oncogenes and TP53 tumor suppressor gene in a cohort of twenty-four patients diagnosed with squamous cell carcinoma or adenocarcinoma using the screening method "High Resolution Melting" (HRM). Positive findings were confirmed and identified by Sanger sequencing. Totally, we detected DNA sequence changes in targeted regions in seven patients (7/24, 29.2%). In PIK3CA gene, we found six sequence changes in four patients (4/24, 16.7%) and four of them were confirmed as oncogenic mutations. In KRAS gene, we detected sequence changes in four patients (4/24, 16.7%). Conversely, we identified pathogenic or potentially pathogenic sequence changes neither in EGFR nor TP53 genes. Our results suggest that sequence changes are specific neither for a certain histological subtype, clinical stage nor lymph node involvement and they appear independently on the presence of HPV (human papillomavirus) infection since early clinical stages. We observed the correlation between the presence of DNA sequence changes and hTERC gene amplification, but we did not find a significant relationship between the identified DNA sequence changes and detected copy-number alterations using the technique of array-CGH (array-based comparative genomic hybridization). Regardless our results confirmed an important role of oncogenic mutations in PIK3CA and KRAS genes in the neoplastic transformation process in the cervical carcinoma pathogenesis. Their identification in the early clinical stages should encourage further studies to better understand these mutations and exploit them for more detailed diagnostics.
Insights
Oncogenic mutations in PIK3CA and KRAS genes are common in cervical cancer, appearing early and independently of HPV. These findings highlight their role in neoplastic transformation and potential diagnostic value.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Oncogenic mutations in proto-oncogenes and tumor suppressor genes are key events in cancerogenesis.
- Cervical carcinoma pathogenesis involves genetic alterations, including mutations in key genes.
Purpose of the Study:
- To analyze the mutation status of PIK3CA, KRAS, EGFR proto-oncogenes, and the TP53 tumor suppressor gene in cervical cancer patients.
- To investigate the correlation of these mutations with clinicopathological features and HPV status.
Main Methods:
- Screening using High Resolution Melting (HRM) analysis.
- Confirmation and identification of mutations by Sanger sequencing.
- Analysis of hTERC gene amplification and copy-number alterations using array-CGH.
Main Results:
- DNA sequence changes were detected in 29.2% (7/24) of patients.
- PIK3CA mutations were found in 16.7% (4/24) of patients, with four confirmed oncogenic mutations.
- KRAS sequence changes were detected in 16.7% (4/24) of patients. No pathogenic changes were found in EGFR or TP53.
- Mutations were independent of histological subtype, clinical stage, lymph node involvement, and HPV status.
- A correlation was observed between DNA sequence changes and hTERC gene amplification, but not with array-CGH detected alterations.
Conclusions:
- PIK3CA and KRAS gene mutations play a significant role in cervical carcinoma pathogenesis.
- These mutations are present in early clinical stages and may serve as diagnostic markers.
- Further research is needed to understand these mutations and their diagnostic potential.

