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Published on: March 25, 2014
Analysis of Neuronal Spike Trains, Deconstructed
Johnatan Aljadeff1, Benjamin J Lansdell2, Adrienne L Fairhall3
1Department of Physics, University of California, San Diego, San Diego, CA 92093, USA; Department of Neurobiology, University of Chicago, Chicago, IL 60637, USA.
This review contrasts analytical tools for building predictive models of neuronal firing from sensory and motor data. It highlights methods for complex datasets, aiding quantitative neuroscience research.
Area of Science:
- Neuroscience
- Computational Neuroscience
- Quantitative Biology
Background:
- Neuronal firing encodes sensory information and drives motor behavior.
- Developing predictive models linking neural activity to external variables is a key goal in neuroscience.
Purpose of the Study:
- To review and contrast analytical tools for building predictive models of neuronal firing.
- To focus on models that extract low-dimensional representations from external variables and incorporate neural history.
- To illustrate techniques with complex datasets, including those with strong correlations.
Main Methods:
- Review of analytical tools for relating sensory/motor streams to neuronal firing.
- Focus on models comparing external variables to feature vectors for low-dimensional representation.
- Incorporation of spiking history and nonlinear transformations for spike prediction.
- Application to datasets of varying complexity, including natural stimuli and movement data.
- Use of spectral correlation to compare model performance.
Main Results:
- Different analytical tools are presented and contrasted for their effectiveness.
- Techniques are illustrated using complex datasets, demonstrating their applicability.
- Model fitting in the presence of strong correlations (natural stimuli, movement) is addressed.
- Spectral correlation provides a metric for evaluating the success of different modeling approaches.
Conclusions:
- A range of analytical tools exist for modeling neuronal firing based on external variables.
- Model selection and fitting require careful consideration of data complexity and correlations.
- Spectral correlation is a valuable method for assessing the performance of predictive neural models.
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