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Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
Nuclear Receptors in Drug Metabolism, Drug Response and Drug Interactions
Chandra Prakash1, Baltazar Zuniga2, Chung Seog Song3
1Department of Molecular Medicine/Institute of Biotechnology, The University of Texas Health Science Center at San Antonio, Texas Research Park, 15355 Lambda Drive, San Antonio, Texas 78245; William Carey University College of Osteopathic Medicine, 498 Tucsan Ave, Hattiesburg, Mississipi 39401.
Abstract:
Orally delivered small-molecule therapeutics are metabolized in the liver and intestine by phase I and phase II drug-metabolizing enzymes (DMEs), and transport proteins coordinate drug influx (phase 0) and drug/drug-metabolite efflux (phase III). Genes involved in drug metabolism and disposition are induced by xenobiotic-activated nuclear receptors (NRs), i.e. PXR (pregnane X receptor) and CAR (constitutive androstane receptor), and by the 1α, 25-dihydroxy vitamin D3-activated vitamin D receptor (VDR), due to transactivation of xenobiotic-response elements (XREs) present in phase 0-III genes. Additional NRs, like HNF4-α, FXR, LXR-α play important roles in drug metabolism in certain settings, such as in relation to cholesterol and bile acid metabolism. The phase I enzymes CYP3A4/A5, CYP2D6, CYP2B6, CYP2C9, CYP2C19, CYP1A2, CYP2C8, CYP2A6, CYP2J2, and CYP2E1 metabolize >90% of all prescription drugs, and phase II conjugation of hydrophilic functional groups (with/without phase I modification) facilitates drug clearance. The conjugation step is mediated by broad-specificity transferases like UGTs, SULTs, GSTs. This review delves into our current understanding of PXR/CAR/VDR-mediated regulation of DME and transporter expression, as well as effects of single nucleotide polymorphism (SNP) and epigenome (specified by promoter methylation, histone modification, microRNAs, long non coding RNAs) on the expression of PXR/CAR/VDR and phase 0-III mediators, and their impacts on variable drug response. Therapeutic agents that target epigenetic regulation and the molecular basis and consequences (overdosing, underdosing, or beneficial outcome) of drug-drug/drug-food/drug-herb interactions are also discussed. Precision medicine requires understanding of a drug's impact on DME and transporter activity and their NR-regulated expression in order to achieve optimal drug efficacy without adverse drug reactions. In future drug screening, new tools such as humanized mouse models and microfluidic organs-on-chips, which mimic the physiology of a multicellular environment, will likely replace the current cell-based workflow.
Insights
This review explores how nuclear receptors (NRs) like PXR, CAR, and VDR regulate drug-metabolizing enzymes and transporters. Understanding genetic and epigenetic factors is key to personalized medicine and avoiding adverse drug reactions.
Area of Science:
- Pharmacology
- Molecular Biology
- Genetics
Background:
- Orally administered drugs are processed by liver and intestinal enzymes and transporters.
- Nuclear receptors (NRs) like PXR, CAR, and VDR control genes for drug metabolism and transport.
- Genetic variations and epigenetics influence drug response.
Purpose of the Study:
- To review the regulation of drug-metabolizing enzymes (DMEs) and transporters by PXR, CAR, and VDR.
- To examine the impact of genetic (SNP) and epigenetic factors on DME/transporter expression and drug response.
- To discuss therapeutic strategies targeting epigenetic regulation and drug interactions.
Main Methods:
- Literature review of PXR/CAR/VDR-mediated gene regulation.
- Analysis of single nucleotide polymorphism (SNP) and epigenome effects on drug disposition genes.
- Discussion of drug-drug, drug-food, and drug-herb interactions.
- Exploration of novel drug screening models (e.g., organs-on-chips).
Main Results:
- PXR, CAR, and VDR are key regulators of phase I and II drug-metabolizing enzymes and phase 0-III transporters.
- SNPs and epigenetic modifications significantly alter the expression of these genes, leading to variable drug responses.
- Drug interactions can arise from altered DME and transporter activity.
Conclusions:
- Understanding NR-mediated regulation of DMEs and transporters is crucial for precision medicine.
- Targeting epigenetic regulation and characterizing interactions are vital for optimizing drug efficacy and safety.
- Advanced models like organs-on-chips will improve future drug screening.
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