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Updated: Mar 17, 2026

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
Characterization of In Vitro Resistance Development to the Novel Echinocandin CD101 in Candida Species
Jeffrey B Locke1, Amanda L Almaguer2, Douglas E Zuill2
1Cidara Therapeutics, Inc., San Diego, California, USA jlocke@cidara.com.
Abstract:
CD101 is a novel echinocandin with a long half-life undergoing clinical development for treatment of candidemia/invasive candidiasis and vulvovaginal candidiasis. The potential for and mechanisms underlying the development of resistance to CD101 in Candida species were investigated by using spontaneous resistance and serial passage selection methodologies. Four Candida spp. (C. albicans, C. glabrata, C. parapsilosis, and C. krusei) were chosen for resistance characterization with CD101, anidulafungin, and caspofungin. The frequency of spontaneous, single-step mutations conferring reduced susceptibility to CD101 at 1× the agar growth inhibition concentration was low across all species, with median frequencies ranging from 1.35 × 10(-8) to 3.86 × 10(-9), similar to ranges generated for anidulafungin and caspofungin. Serial passage of Candida spp. on agar plates containing drug gradients demonstrated a low potential for resistance development, with passage 20 CD101-selected strains possessing increases in MICs equivalent to or lower than those for the majority of strains generated under selection with anidulafungin and caspofungin. A total of 12 fks "hot spot" mutations were identified, typically in strains with the highest MIC shifts. Cross-resistance was broadly observed among the 3 echinocandins evaluated, with no CD101-selected mutants (with or without fks hot spot mutations) exhibiting reduced susceptibility to CD101 but not also to anidulafungin and/or caspofungin. Consistent with currently approved echinocandins, CD101 demonstrates a low potential for resistance development, which could be further enhanced in vivo by the high maximum concentration of drug in serum (Cmax)/area under the concentration-time curve (AUC) plasma drug exposure achieved with once-weekly dosing of CD101.
Insights
CD101, an investigational echinocandin, shows a low potential for developing resistance in Candida species. Its efficacy against fungal infections may be enhanced by its long half-life and high drug exposure.
Area of Science:
- Mycology
- Antimicrobial resistance
- Pharmacology
Background:
- CD101 is a novel echinocandin antifungal agent with a prolonged half-life.
- It is under clinical investigation for treating candidemia, invasive candidiasis, and vulvovaginal candidiasis.
Purpose of the Study:
- To investigate the potential for and mechanisms of CD101 resistance development in key Candida species.
- To compare CD101 resistance potential with existing echinocandins (anidulafungin, caspofungin).
Main Methods:
- Spontaneous resistance and serial passage selection methodologies were employed.
- Four Candida species (C. albicans, C. glabrata, C. parapsilosis, C. krusei) were tested.
- Minimum Inhibitory Concentrations (MICs) and fks 'hot spot' mutations were analyzed.
Main Results:
- The frequency of spontaneous CD101 resistance mutations was low across all tested species.
- Serial passage experiments indicated a low potential for CD101 resistance development.
- Cross-resistance was observed among CD101, anidulafungin, and caspofungin; no CD101-specific resistance was found.
- 12 fks 'hot spot' mutations were identified in strains with the highest MIC shifts.
Conclusions:
- CD101 demonstrates a low intrinsic potential for resistance development in Candida species.
- This low resistance potential is comparable to currently approved echinocandins.
- The drug's pharmacokinetic profile (high Cmax/AUC) may further mitigate resistance in vivo.

