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Published on: October 14, 2011
Locating and Activating Molecular 'Time Bombs': Induction of Mycolata Prophages
Zoe A Dyson1, Teagan L Brown1, Ben Farrar1
1La Trobe Institute of Molecular Sciences, Bendigo, VIC, Australia.
Abstract:
Little is known about the prevalence, functionality and ecological roles of temperate phages for members of the mycolic acid producing bacteria, the Mycolata. While many lytic phages infective for these organisms have been isolated, and assessed for their suitability for use as biological control agents of activated sludge foaming, no studies have investigated how temperate phages might be induced for this purpose. Bioinformatic analysis using the PHAge Search Tool (PHAST) on Mycolata whole genome sequence data in GenBank for members of the genera Gordonia, Mycobacterium, Nocardia, Rhodococcus, and Tsukamurella revealed 83% contained putative prophage DNA sequences. Subsequent prophage inductions using mitomycin C were conducted on 17 Mycolata strains. This led to the isolation and genome characterization of three novel Caudovirales temperate phages, namely GAL1, GMA1, and TPA4, induced from Gordonia alkanivorans, Gordonia malaquae, and Tsukamurella paurometabola, respectively. All possessed highly distinctive dsDNA genome sequences.
Insights
This study investigated temperate phages in Mycolata bacteria. Researchers successfully induced and characterized three novel temperate phages (GAL1, GMA1, TPA4), revealing their potential for biological control applications.
Area of Science:
- Microbiology
- Virology
- Genomics
Background:
- Temperate phages' roles in Mycolata (mycolic acid-producing bacteria) remain largely unknown.
- While lytic phages are studied for biological control of sludge foaming, temperate phage induction is unexplored.
Purpose of the Study:
- To investigate the prevalence and potential induction of temperate phages in Mycolata.
- To characterize novel temperate phages isolated from Mycolata species.
Main Methods:
- Bioinformatic analysis using PHAge Search Tool (PHAST) on Mycolata genomes.
- Prophage induction experiments using mitomycin C on 17 Mycolata strains.
- Genome sequencing and characterization of isolated phages.
Main Results:
- 83% of analyzed Mycolata genomes contained putative prophage DNA.
- Three novel Caudovirales temperate phages (GAL1, GMA1, TPA4) were successfully induced and isolated.
- The isolated phages (GAL1, GMA1, TPA4) possess distinct double-stranded DNA genomes.
Conclusions:
- Temperate phages are prevalent in Mycolata, with significant potential for induction.
- Novel temperate phages were discovered, expanding the known phage diversity within this bacterial group.
- These findings lay the groundwork for exploring temperate phages as biological control agents.
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