Related Experiment Video
Updated: Mar 16, 2026

Single-cell Resolution Fluorescence Live Imaging of Drosophila Circadian Clocks in Larval Brain Culture
Published on: January 19, 2018
Pacemaker-neuron-dependent disturbance of the molecular clockwork by a Drosophila CLOCK mutant homologous to the
Euna Lee1, Eunjoo Cho2, Doo Hyun Kang1
1Neuroscience Graduate Program, BK21 Plus Program, Department of Biomedical Sciences, Ajou University School of Medicine, Yeongtong-gu, Suwon, Kyunggi-do 16499, Republic of Korea; Department of Brain Science, Ajou University School of Medicine, Yeongtong-gu, Suwon, Kyunggi-do 16499, Republic of Korea;
Abstract:
Circadian clocks are composed of transcriptional/translational feedback loops (TTFLs) at the cellular level. In Drosophila TTFLs, the transcription factor dCLOCK (dCLK)/CYCLE (CYC) activates clock target gene expression, which is repressed by the physical interaction with PERIOD (PER). Here, we show that amino acids (AA) 657-707 of dCLK, a region that is homologous to the mouse Clock exon 19-encoded region, is crucial for PER binding and E-box-dependent transactivation in S2 cells. Consistently, in transgenic flies expressing dCLK with an AA657-707 deletion in the Clock (Clk(out)) genetic background (p{dClk-Δ};Clk(out)), oscillation of core clock genes' mRNAs displayed diminished amplitude compared with control flies, and the highly abundant dCLKΔ657-707 showed significantly decreased binding to PER. Behaviorally, the p{dClk-Δ};Clk(out) flies exhibited arrhythmic locomotor behavior in the photic entrainment condition but showed anticipatory activities of temperature transition and improved free-running rhythms in the temperature entrainment condition. Surprisingly, p{dClk-Δ};Clk(out) flies showed pacemaker-neuron-dependent alterations in molecular rhythms; the abundance of dCLK target clock proteins was reduced in ventral lateral neurons (LNvs) but not in dorsal neurons (DNs) in both entrainment conditions. In p{dClk-Δ};Clk(out) flies, however, strong but delayed molecular oscillations in temperature cycle-sensitive pacemaker neurons, such as DN1s and DN2s, were correlated with delayed anticipatory activities of temperature transition. Taken together, our study reveals that the LNv molecular clockwork is more sensitive than the clockwork of DNs to dysregulation of dCLK by AA657-707 deletion. Therefore, we propose that the dCLK/CYC-controlled TTFL operates differently in subsets of pacemaker neurons, which may contribute to their specific functions.
Insights
A specific region of the dCLOCK protein is vital for binding PERIOD and regulating circadian rhythms in fruit flies. Deleting this region disrupts molecular oscillations and behavior, particularly in certain pacemaker neurons.
Area of Science:
- Chronobiology
- Molecular Biology
- Neuroscience
Background:
- Circadian clocks rely on transcriptional/translational feedback loops (TTFLs).
- In Drosophila, dCLOCK (dCLK)/CYCLE (CYC) activate gene expression, repressed by PERIOD (PER).
Purpose of the Study:
- To investigate the role of amino acids 657-707 of dCLK in PER binding and transactivation.
- To analyze the impact of deleting this dCLK region on circadian rhythms and gene expression in Drosophila.
Main Methods:
- S2 cell assays for PER binding and transactivation.
- Generation of transgenic flies (p{dClk-Δ};Clk(out)) with dCLK lacking amino acids 657-707.
- Analysis of mRNA oscillations, protein abundance in specific neurons (LNvs, DNs), and locomotor behavior.
Main Results:
- Amino acids 657-707 of dCLK are crucial for PER binding and E-box transactivation.
- dCLKΔ657-707 showed reduced PER binding and diminished mRNA oscillation amplitude in transgenic flies.
- Locomotor behavior became arrhythmic under light but showed temperature-anticipatory activity; molecular rhythms were altered, especially in LNvs.
Conclusions:
- The dCLK region (AA 657-707) is essential for robust circadian clock function in Drosophila.
- Dysregulation of this dCLK region differentially affects molecular clockworks in subsets of pacemaker neurons (LNvs vs. DNs).
- This suggests distinct operational mechanisms of TTFLs within different pacemaker neuron populations, contributing to their specialized roles.
Related Concept Videos
Circadian Rhythms and Gene Regulation
Biological Clocks and Seasonal Responses

