Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Assembly of Cytoskeletal Filaments01:18

Assembly of Cytoskeletal Filaments

28.2K
Cytoskeletal filaments are polymeric forms of smaller protein subunits. However, individual cytoskeletal filaments may easily disassemble or associate with other similar filaments to form rigid structures. Microfilaments, made of actin monomers, rely on actin-binding proteins to form bundles and create networks of individual actin filaments. Microtubules rely on microtubule-associated proteins (MAPs) to form sturdy cylindrical structures. However, the proteins involved in forming complex...
28.2K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

RLBWT-based LCP computation in compressed space for terabase-scale pangenome analysis.

Bioinformatics (Oxford, England)·2026
Same author

Construction and validation of a lncRNA/circRNA-miRNA-mRNA ceRNA network in allergic rhinitis pathogenesis.

BMC medical genomics·2026
Same author

Unlocking stable four-electron redox chemistry in aqueous zinc-iodine batteries via solvation structure reconstruction.

Journal of colloid and interface science·2026
Same author

Tailoring Solvation Sheaths and Interfacial Chemistry: A Review of Electrolyte Engineering for Highly Reversible Aqueous Zinc-Iodine Batteries.

Molecules (Basel, Switzerland)·2026
Same author

Characteristics of patients with acute respiratory failure in obesity hypoventilation syndrome in the intensive care unit: A retrospective cohort study.

Respiratory medicine·2026
Same author

From in silico screening to mechanism: computational advances in developing anti-allergic agents for food allergy.

Critical reviews in food science and nutrition·2026

Related Experiment Video

Updated: Mar 16, 2026

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

16.2K

WebSTAR3D: a web server for RNA 3D structural alignment.

Erwin Holzhauser1, Ping Ge1, Shaojie Zhang1

  • 1Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA.

Bioinformatics (Oxford, England)
|August 7, 2016
PubMed
Summary
This summary is machine-generated.

WebSTAR3D is a web server for aligning RNA 3D structures. It provides visualizations and sequence alignments for uploaded or PDB-coded structures.

More Related Videos

Analyzing and Building Nucleic Acid Structures with 3DNA
16:24

Analyzing and Building Nucleic Acid Structures with 3DNA

Published on: April 26, 2013

21.4K
Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
05:08

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins

Published on: July 8, 2025

1.3K

Related Experiment Videos

Last Updated: Mar 16, 2026

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

16.2K
Analyzing and Building Nucleic Acid Structures with 3DNA
16:24

Analyzing and Building Nucleic Acid Structures with 3DNA

Published on: April 26, 2013

21.4K
Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
05:08

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins

Published on: July 8, 2025

1.3K

Area of Science:

  • Structural Biology
  • Bioinformatics
  • Computational Biology

Background:

  • RNA 3D structure alignment is crucial for understanding RNA function and evolution.
  • Existing tools may lack user-friendliness or comprehensive output features.

Purpose of the Study:

  • To introduce WebSTAR3D, a novel web server for RNA 3D structure alignment.
  • To provide an accessible and efficient platform for researchers to align and analyze RNA structures.

Main Methods:

  • The WebSTAR3D server accepts RNA structures in PDB or mmCIF formats.
  • Input can be provided via PDB codes or direct file uploads.
  • Alignment results are visualized using Jmol/JSmol, with accompanying sequence alignments.

Main Results:

  • WebSTAR3D successfully aligns RNA 3D structures from various input formats.
  • The server generates interactive visualizations of superimposed structures.
  • Users can download nucleotide mappings and aligned PDB files.

Conclusions:

  • WebSTAR3D offers a user-friendly and comprehensive solution for RNA 3D structure alignment.
  • The tool facilitates structural comparisons and analysis, aiding RNA research.
  • It enhances the accessibility of RNA structure alignment for the scientific community.