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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
Published on: July 16, 2017
Deciphering the Interplay among Multisite Phosphorylation, Interaction Dynamics, and Conformational Transitions in a
Philip Lössl1, Andrea M Brunner1, Fan Liu1
1Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584CH Utrecht, The Netherlands; Netherlands Proteomics Center, Padualaan 8, 3584CH Utrecht, The Netherlands.
Multisite protein phosphorylation, crucial for cell division, was mapped using mass spectrometry. This reveals a sequential phosphorylation process in Bora protein, impacting its interaction with Polo-like kinase 1 (Plk1).
Area of Science:
- Molecular Biology
- Biochemistry
- Proteomics
Background:
- Multisite phosphorylation regulates protein function but is challenging to analyze biochemically.
- Understanding phosphorylation dynamics is key for cell cycle regulation, especially after DNA damage.
- Polo-like kinase 1 (Plk1) activation by Aurora kinase A (Aur-A) and Bora is vital for mitotic entry.
Purpose of the Study:
- To characterize the multisite phosphorylation of Bora and its impact on Plk1 activation.
- To elucidate the sequential order and mechanistic consequences of Bora phosphorylation.
- To establish a mass spectrometry-based strategy for analyzing complex phosphorylation events.
Main Methods:
- Integration of native MS, cross-linking MS, bottom-up and top-down proteomics.
- Ion mobility spectrometry-MS to analyze structural changes.
- Characterization of the Plk1, Aur-A, and Bora protein complex.
Main Results:
- Aur-A/Bora and Plk1/Bora heterodimers form during Plk1 activation.
- Plk1/Bora interaction depends on extensive Bora multisite phosphorylation.
- Bora phosphorylation occurs sequentially, involving up to 16 sites, and induces structural changes.
Conclusions:
- A sequential, ordered mechanism for multisite Bora phosphorylation was revealed.
- Multisite phosphorylation drives structural rearrangements critical for Plk1/Bora complex formation.
- The developed MS strategy is effective for dissecting complex multisite phosphorylation events.
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