Related Experiment Video
Updated: Mar 16, 2026

09:41
Reconstitution Of β-catenin Degradation In Xenopus Egg Extract
Published on: June 17, 2014
12.5K
Ubiquitin-mediated proteolysis in Xenopus extract
Gary S McDowell1, Anna Philpott
1Center for Regenerative and Developmental Biology, Department of Biology, Tufts University, Medford, MA, USA.
The International Journal of Developmental Biology
|August 17, 2016
Summary
Xenopus laevis egg extracts provide a versatile system for studying ubiquitylation and protein degradation. This research highlights its historical use and ongoing utility in understanding ubiquitin-mediated proteolysis.
Area of Science:
- Biochemistry
- Cell Biology
- Developmental Biology
Background:
- Ubiquitylation involves attaching ubiquitin to proteins, often targeting them for degradation.
- The ubiquitin-proteasome system and lysosomal pathways are key protein degradation routes.
- Xenopus laevis egg extracts have long served as a cell-free system for studying these processes.
Purpose of the Study:
- To review the historical use and versatility of Xenopus laevis extracts in ubiquitylation research.
- To highlight the system's contributions to understanding ubiquitin-mediated protein degradation.
- To showcase its application in investigating the in vivo consequences of ubiquitylation.
Main Methods:
- Utilizing Xenopus laevis cytoplasmic extracts as a cell-free biochemical system.
- Employing Xenopus as a developmental model for in vivo ubiquitylation studies.
- Biochemical assays to study ubiquitin conjugation and protein degradation.
Main Results:
- Xenopus extracts have been instrumental in advancing the study of ubiquitin-mediated proteolysis.
- The system facilitates biochemical investigations into ubiquitylation mechanisms.
- Its developmental model capacity allows exploration of ubiquitylation's in vivo roles.
Conclusions:
- Xenopus laevis extracts are a powerful and versatile tool for studying ubiquitylation and protein degradation.
- This system has significantly contributed to our understanding of proteolysis.
- Continued use of Xenopus extracts promises further insights into ubiquitylation's diverse functions.
More Related Videos
Related Concept Videos
The Proteasome
1.9K
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
1.9K
The Proteasome
10.4K
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
10.4K
Regulated Protein Degradation
9.1K
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
9.1K
The Proteasome Structure
2.1K
The ubiquitin-proteasome pathway is a well-known mechanism utilized by eukaryotic cells to remove cytoplasmic proteins that are misfolded, damaged, or no longer needed. In this pathway, the protein that needs to be eliminated undergoes a process called ubiquitination, where a chain of ubiquitin molecules is attached to the 48th lysine residue of the target protein. This ubiquitin modification helps the proteasome distinguish between a target protein and a healthy protein.
The proteasome is an...
The proteasome is an...
2.1K
Export of Misfolded Proteins out of the ER
5.4K
After folding, the ER assesses the quality of secretory and membrane proteins. The correctly folded proteins are cleared by the calnexin cycle for transport to their final destination, while misfolded proteins are held back in the ER lumen. The ER chaperones attempt to unfold and refold the misfolded proteins but sometimes fail to achieve the correct native conformation. Such terminally misfolded proteins are then exported to the cytosol by ER-associated degradation or ERAD pathway for...
5.4K
Intralumenal Vesicles and Multivesicular Bodies
5.1K
Intraluminal vesicles (ILVs) are small vesicles 50-80 nm in diameter formed during the maturation of early endosomes. A specialized endosome containing numerous ILVs is called a multivesicular body (MVB). ILVs contain internalized molecules such as antigens, nucleic acids, proteins, and metabolites. Some of these molecules are released from the MVBs inside exosomes and are transported to other cells. Other MVBs contain molecules that are retained in the ILVs and are later degraded within the...
5.1K

