Related Experiment Video
Updated: Mar 16, 2026

Purification and Visualization of Lipopolysaccharide from Gram-negative Bacteria by Hot Aqueous-phenol Extraction
Published on: May 28, 2012
Molecular Interactions of Lipopolysaccharide with an Outer Membrane Protein from Pseudomonas aeruginosa Probed by
Iga Kucharska1, Binyong Liang1, Nicholas Ursini1
1Center for Membrane and Cell Physiology and Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine , Charlottesville, Virginia 22908, United States.
Abstract:
Pseudomonas aeruginosa is an opportunistic human pathogen causing pneumonias that are particularly severe in cystic fibrosis and immunocompromised patients. The outer membrane (OM) of P. aeruginosa is much less permeable to nutrients and other chemical compounds than that of Escherichia coli. The low permeability of the OM, which also contributes to Pseudomonas' significant antibiotic resistance, is augmented by the presence of the outer membrane protein H (OprH). OprH directly interacts with lipopolysaccharides (LPS) that constitute the outer leaflet of the OM and thus contributes to the structural stability of the OM. In this study, we used solution NMR spectroscopy to characterize the interactions between LPS and OprH in molecular detail. NMR chemical shift perturbations observed upon the addition of LPS to OprH in DHPC micelles indicate that this interaction is predominantly electrostatic and localized to the extracellular loops 2 and 3 and a number of highly conserved basic residues near the extracellular barrel rim of OprH. Single-site mutations of these residues were not enough to completely abolish binding, but OprH with cumulative mutations of Lys70, Arg72, and Lys103 no longer binds LPS. The dissociation constant (∼200 μM) measured by NMR is sufficient to efficiently bind LPS to OprH in the OM. This work highlights that solution NMR is suitable to study specific interactions of lipids with integral membrane proteins and provides a detailed molecular model for the interaction of LPS with OprH; i.e., an interaction that contributes to the integrity of the OM of P. aeruginosa under low divalent cation and antibiotic stress conditions. These methods should thus be useful for screening antibiotics that might disrupt OprH-LPS interactions and thereby increase the permeability of the OM of P. aeruginosa.
Insights
Pseudomonas aeruginosa outer membrane protein H (OprH) binds lipopolysaccharides (LPS) electrostatically. Disrupting this OprH-LPS interaction could increase bacterial outer membrane permeability, aiding antibiotic development.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Pseudomonas aeruginosa is an opportunistic pathogen causing severe pneumonia, especially in vulnerable populations.
- Its outer membrane (OM) exhibits low permeability, contributing to antibiotic resistance.
- Outer membrane protein H (OprH) enhances OM stability by interacting with lipopolysaccharides (LPS).
Purpose of the Study:
- To elucidate the molecular details of the interaction between OprH and LPS.
- To investigate the role of OprH-LPS binding in the structural integrity of the P. aeruginosa OM.
- To explore potential therapeutic strategies targeting the OprH-LPS interaction.
Main Methods:
- Solution Nuclear Magnetic Resonance (NMR) spectroscopy was employed.
- NMR chemical shift perturbations were analyzed upon LPS addition to OprH in DHPC micelles.
- Site-directed mutagenesis was used to identify key residues involved in LPS binding.
Main Results:
- The OprH-LPS interaction is primarily electrostatic, localized to extracellular loops and conserved basic residues.
- Cumulative mutations of Lys70, Arg72, and Lys103 abolished LPS binding.
- A dissociation constant (Kd) of approximately 200 μM was determined, indicating efficient binding.
Conclusions:
- Solution NMR is effective for studying lipid-protein interactions in membrane proteins.
- A detailed molecular model of OprH-LPS interaction was established, crucial for OM integrity.
- This research provides a foundation for developing antibiotics that disrupt OprH-LPS binding to enhance OM permeability.

