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Comparative Proteomic Analysis of Whole Kidney, Medulla, and Cortical Tubules in Diabetic Pathogenesis of Kidney Injury in Mice
Published on: May 2, 2025
New insights into molecular mechanisms of epigenetic regulation in kidney disease
Imari Mimura1, Tetsuhiro Tanaka1, Masaomi Nangaku1
1Division of Nephrology and Endocrinology, The University of Tokyo, Tokyo, Japan.
Abstract:
The number of patients with kidney failure has increased in recent years. Different factors contribute to the progression of chronic kidney disease, including glomerular sclerosis, atherosclerosis of the renal arteries and tubulointerstitial fibrosis. Tubulointerstitial injury is induced by hypoxia and other inflammatory signals, leading to fibroblast activation. Technological advances using high-throughput sequencing has enabled the determination of the expression profile of almost all genes, revealing that gene expression is intricately regulated by DNA methylation, histone modification, changes in chromosome conformation, long non-coding RNAs and microRNAs. These epigenetic modifications are stored as cellular epigenetic memory. Epigenetic memory leads to adult-onset disease or ageing in the long term and may possibly play an important role in the kidney disease process. Herein we emphasize the importance of clarifying the molecular mechanisms underlying epigenetic modifications because this may lead to the development of new therapeutic targets in kidney disease.
Insights
Kidney failure is rising, driven by factors like tubulointerstitial injury. Epigenetic modifications, including DNA methylation and non-coding RNAs, create cellular memory that may impact kidney disease progression and aging.
Area of Science:
- Nephrology
- Molecular Biology
- Epigenetics
Background:
- Chronic kidney disease (CKD) progression involves glomerular sclerosis, renal artery atherosclerosis, and tubulointerstitial fibrosis.
- Tubulointerstitial injury, triggered by hypoxia and inflammation, activates fibroblasts.
- Recent technological advances allow comprehensive gene expression profiling.
Purpose of the Study:
- To highlight the role of epigenetic modifications in kidney disease.
- To emphasize the importance of understanding epigenetic mechanisms for therapeutic development.
Main Methods:
- Review of current understanding of gene regulation.
- Analysis of high-throughput sequencing data revealing epigenetic regulation.
- Exploration of cellular epigenetic memory in disease contexts.
Main Results:
- Gene expression is intricately regulated by DNA methylation, histone modification, chromosome conformation, long non-coding RNAs, and microRNAs.
- These epigenetic modifications establish a cellular epigenetic memory.
- This memory can contribute to adult-onset diseases and aging.
Conclusions:
- Epigenetic memory may play a significant role in the pathogenesis of kidney disease.
- Clarifying the molecular mechanisms of epigenetic modifications is crucial.
- Understanding these mechanisms could lead to novel therapeutic targets for kidney disease.
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