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Updated: Mar 15, 2026

Improved Swiss-rolling Technique for Intestinal Tissue Preparation for Immunohistochemical and Immunofluorescent Analyses
Published on: July 13, 2016
Immunofluorescent Staining of Mouse Intestinal Stem Cells
Kevin P O'Rourke1, Lukas E Dow2, Scott W Lowe3
1Weill Cornell/Rockefeller/Sloan Kettering Tri-Institutional MD-PhD Program, New York, USA; Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, USA.
This protocol details immunofluorescent staining of intestinal organoids to visualize cell proliferation and differentiation markers. The method enables detailed analysis of cellular behavior using confocal microscopy.
Area of Science:
- Cell Biology
- Histology
Background:
- Immunofluorescence is crucial for visualizing molecular markers in biological samples.
- Organoids serve as valuable models for studying tissue development and function.
- Understanding cell behavior in organoids requires robust imaging techniques.
Purpose of the Study:
- To provide a detailed protocol for immunofluorescent staining of intestinal organoids.
- To enable visualization of cell proliferation and differentiation markers.
- To facilitate analysis via immunofluorescent confocal microscopy.
Main Methods:
- Fixation and permeabilization of intestinal organoids.
- Immunofluorescent staining for specific cellular markers (e.g., EdU, Paneth cells, goblet cells, enterocytes).
- Mounting organoids for immunofluorescent confocal microscopy.
Main Results:
- Successful visualization of cell proliferation using EdU incorporation.
- Observation of intestinal differentiation markers within organoids.
- Demonstration of a comprehensive method for organoid immunofluorescence.
Conclusions:
- This protocol offers a reliable method for analyzing intestinal organoid structure and cell function.
- The technique allows for detailed study of cell proliferation and differentiation.
- Immunofluorescent staining is key to understanding molecular markers in organoid models.
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