Related Experiment Video
Updated: Mar 15, 2026

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
Published on: June 27, 2025
Bacterial community structure and function shift across a northern boreal forest fire chronosequence
Hui Sun1,2, Minna Santalahti2, Jukka Pumpanen3
1Collaborative Innovation Center of Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, 210037, China.
Forest soil bacterial diversity recovers quickly after fire, with rare microbes driving community shifts over time. Soil properties like temperature and pH are key to recovery and function.
Area of Science:
- Ecology
- Microbiology
- Forestry
Background:
- Soil microbial communities are crucial for forest ecosystem health and function.
- Fire is a significant disturbance that can alter soil microbial dynamics.
- Long-term studies on bacterial community recovery post-fire are limited.
Purpose of the Study:
- To investigate the long-term changes in soil bacterial community structure and function following forest fires.
- To understand the role of bacterial diversity and specific microbial groups in forest recovery after fire.
- To identify key environmental factors influencing soil bacterial dynamics across a fire chronosequence.
Main Methods:
- Characterization of soil bacterial communities using Illumina MiSeq sequencing.
- Assessment of functional gene profiles with a functional gene array (GeoChip).
- Analysis of soil bacterial communities across a 2 to 152-year fire chronosequence.
Main Results:
- Bacterial diversity showed no significant difference between recently and older burned areas, indicating rapid recovery.
- Community composition shifts were primarily influenced by rare operational taxonomic units (OTUs).
- Abundant bacterial phyla included Proteobacteria, Acidobacteria, and Actinobacteria; genes for C and N cycling were widespread.
- Despite functional redundancy, distinct clusters emerged based on fire history, suggesting altered biogeochemical processes.
- Soil temperature, pH, and water content were identified as primary drivers of bacterial community structure and function.
Conclusions:
- Soil bacterial diversity recovers relatively quickly after fire disturbance.
- Rare microbial taxa play a significant role in shaping soil bacterial community dynamics over long time scales.
- Fire history influences the functional potential of soil microbial communities, impacting essential biogeochemical processes.
- Environmental factors such as soil temperature, pH, and moisture are critical in mediating post-fire soil bacterial recovery and function.
Related Concept Videos
Ecological Disturbance
Ecological Succession
Threats to Biodiversity
Gene Regulation in Microbial Communities: Quorum Sensing
Applications of Molecular Taxonomy
Bacterial Phylum Firmicutes

