Structure of human Aichi virus and implications for receptor binding
Related Experiment Video
Updated: Mar 15, 2026

A Miniaturized Glycan Microarray Assay for Assessing Avidity and Specificity of Influenza A Virus Hemagglutinins
Published on: May 29, 2016
Ling Zhu1,2, Xiangxi Wang3, Jingshan Ren1
1Division of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK.
Insights
Aichi virus (AiV), a kobuvirus causing severe gastroenteritis in children, has a novel structure. Understanding this structure may lead to new antiviral treatments for this significant pathogen.
Area of Science:
- Virology
- Structural Biology
- Picornaviridae
Background:
- Aichi virus (AiV) is an understudied kobuvirus linked to severe gastroenteritis in young children.
- High seroprevalence of AiV underscores its public health importance, particularly in developing nations.
- Currently, no vaccines or effective antiviral therapies exist for AiV infections.
Discussion:
- The first high-resolution structure of a kobuvirus reveals unique features distinct from enteroviruses and cardioviruses.
- AiV possesses a shallow surface depression instead of the typical viral canyon, potentially altering receptor interactions.
- The VP0 capsid protein is not cleaved, resulting in an unusual internal structure within the VP2 barrel.
Key Insights:
- A novel polyproline helix at the VP1 C terminus, previously unseen in picornaviruses, was identified.
- This polyproline motif may play a role in host-cell attachment, as a corresponding peptide partially inhibited infectivity.
- The findings provide a structural basis for understanding AiV pathogenesis and host interactions.
Outlook:
- The determined AiV structure offers a foundation for identifying cellular receptors and developing targeted antiviral strategies.
- Further research into the polyproline helix function could reveal new avenues for therapeutic intervention.
- Structural insights may facilitate the design of novel vaccines against Aichi virus.
Abstract:
Aichi virus (AiV), an unusual and poorly characterized picornavirus, classified in the genus Kobuvirus, can cause severe gastroenteritis and deaths in children below the age of five years, especially in developing countries1,2. The seroprevalence of AiV is approximately 60% in children under the age of ten years and reaches 90% later in life3,4. There is no available vaccine or effective antiviral treatment. Here, we describe the structure of AiV at 3.7 Å. This first high-resolution structure for a kobuvirus is intermediate between those of the enteroviruses and cardioviruses, with a shallow, narrow depression bounded by the prominent VP0 CD loops (linking the C and D strands of the β-barrel), replacing the depression known as the canyon, frequently the site of receptor attachment in enteroviruses. VP0 is not cleaved to form VP2 and VP4, so the 'VP2' β-barrel structure is complemented with a unique extended structure on the inside of the capsid. On the outer surface, a polyproline helix structure, not seen previously in picornaviruses is present at the C terminus of VP1, a position where integrin binding motifs are found in some other picornaviruses. A peptide corresponding to this polyproline motif somewhat attenuates virus infectivity, presumably blocking host-cell attachment. This may guide cellular receptor identification.
Related Concept Videos
Leaky Scanning
Viral Structure
Viral Recombination
Introduction to Virus
Viruses with RNA Genomes
Viral Mutations

