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Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
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Human 15-LOX-1 active site mutations alter inhibitor binding and decrease potency.

Michelle Armstrong1, Christopher van Hoorebeke1, Thomas Horn1

  • 1Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064, United States.

Bioorganic & Medicinal Chemistry
|September 21, 2016
PubMed
Summary
This summary is machine-generated.

Researchers investigated human 15-lipoxygenase-1 (h15-LOX-1) inhibitors to understand their interaction with the enzyme's active site, crucial for developing new stroke therapeutics. Four h15-LOX-1 mutants revealed key residues influencing inhibitor binding.

Keywords:
15-Lipoxygenase-1DockingHumanInhibitorMutagenesis

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Pharmacology

Background:

  • Human 15-lipoxygenase-1 (h15-LOX-1) produces lipid mediators involved in diseases like stroke.
  • Understanding h15-LOX-1 inhibitor interactions is vital for developing novel stroke therapeutics.
  • Current knowledge of inhibitor binding within the h15-LOX-1 active site is limited.

Purpose of the Study:

  • To structurally elucidate inhibitor interactions within the h15-LOX-1 active site.
  • To identify specific active site residues critical for h15-LOX-1 inhibitor binding.
  • To guide the development of next-generation h15-LOX-1 inhibitors.

Main Methods:

  • Site-directed mutagenesis was used to generate eight h15-LOX-1 mutants.
  • Molecular modeling guided the selection of active site residues for mutation.
  • IC50 values and steady-state inhibition kinetics were determined for wild-type and mutant enzymes.

Main Results:

  • Four mutants (F414I, F414W, E356Q, L407A) showed altered inhibitor potency compared to wild-type h15-LOX-1.
  • The inhibitors ML351 and compound 18 bind to a similar aromatic pocket near F414.
  • Subtle differences in binding modes were observed between ML351 and compound 18.

Conclusions:

  • Residues F414, E356, and L407 are important for h15-LOX-1 inhibitor binding.
  • ML351 and compound 18 exhibit similar but distinct binding interactions within the h15-LOX-1 active site.
  • This study provides a structural basis for designing improved h15-LOX-1 inhibitors for stroke treatment.