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Automating NEURON Simulation Deployment in Cloud Resources.

David B Stockton¹, Fidel Santamaria²

¹Department of Biomedical Engineering, The University of Texas at San Antonio, San Antonio, TX, 78249, USA. david.stockton@utsa.edu.

Neuroinformatics

|September 23, 2016

Summary

This summary is machine-generated.

Cloud computing offers a viable alternative to High Performance Computing (HPC) for neuroscience simulations. This study demonstrates deploying the NEURON simulator across various cloud platforms, enhancing computational accessibility for researchers.

Keywords:

Cloud computing Computational neuroscience Computer simulation Grid computing NEURON (RRID:SCR_005393)NeuroManager

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Area of Science:

Computational Neuroscience
Cloud Computing in Research

Background:

Neuroscience simulations traditionally rely on local servers or High Performance Computing (HPC) facilities.
Cloud computing presents a new, accessible platform for large-scale scientific computation.

Purpose of the Study:

To compare High Performance Computing (HPC) and cloud resources for neuroscience simulations.
To deploy and evaluate the NEURON simulator on multiple cloud platforms.
To extend the NeuroManager software for unified access to diverse computational resources.

Main Methods:

Deployment of the NEURON simulator on Chameleon Cloud, Rackspace, and Amazon Elastic Cloud Computing.
Automation of cloud operations and integration with the NeuroManager software.
Comparative analysis of speedup, efficiency, session time, and cost across platforms.

Main Results:

Successful deployment of NEURON across private and public clouds.
Demonstrated ability to automate and manage simulations via an integrated interface.
Evaluation of performance metrics including speedup, efficiency, and cost-effectiveness.

Conclusions:

Cloud computing is a practical and scalable resource for neuroscience simulations.
The enhanced NeuroManager software simplifies the use of hybrid computational environments.
This approach expands accessibility and efficiency for computational neuroscience research.