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De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit
Deden Derajat Matra1, Toshinori Kozaki2, Kazuo Ishii2
1United Graduate School of Agricultural Sciences, Tokyo University of Agriculture and Technology, Saiwai, Fuchu, Tokyo 183-8509, Japan; Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, IPB Dramaga Campus, Bogor, West Java 16680, Indonesia; College of Agriculture, Ibaraki University, 3-21-1 Chuo, Ami, Inashiki, Ibaraki 300-0393, Japan.
Abstract:
Garcinia mangostana L. (Mangosteen), of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw data from 12 libraries through Ion Proton System. Clean reads of 191,735,809 were obtained from 307,634,890 raw reads. The raw data obtained in this study can be accessible in DDBJ database with accession number of DRA005014 with bioproject accession number of PRJDB5091. We obtained 268,851 transcripts as well as 155,850 unigenes, having N50 value of 555 and 433 bp, respectively. Transcript/unigene length ranged from 201 to 5916 bp. The unigenes were annotated with two main databases from NCBI and UniProtKB, respectively having annotated-sequences of 73,287 and 73,107, respectively. These transcriptomic data will be beneficial for studying transcriptome of Garcinia mangostana L.
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