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Updated: Mar 14, 2026

Author Spotlight: Developing Tools to Tune the Activity of Tyrosine Phosphatases
Published on: September 6, 2024
Inhibition of Low Molecular Weight Protein Tyrosine Phosphatase by an Induced-Fit Mechanism
Rongjun He1, Jifeng Wang1, Zhi-Hong Yu1
1Department of Medicinal Chemistry and Molecular Pharmacology, Department of Chemistry, Center for Cancer Research, and Institute for Drug Discovery, Purdue University , 720 Clinic Drive, West Lafayette, Indiana 47907, United States.
Abstract:
The low molecular weight protein tyrosine phosphatase (LMW-PTP) is a regulator of a number of signaling pathways and has been implicated as a potential target for oncology and diabetes/obesity. There is significant therapeutic interest in developing potent and selective inhibitors to control LMW-PTP activity. We report the discovery of a novel class of LMW-PTP inhibitors derived from sulfophenyl acetic amide (SPAA), some of which exhibit greater than 50-fold preference for LMW-PTP over a large panel of PTPs. X-ray crystallography reveals that binding of SPAA-based inhibitors induces a striking conformational change in the LMW-PTP active site, leading to the formation of a previously undisclosed hydrophobic pocket to accommodate the α-phenyl ring in the ligand. This induced-fit mechanism is likely a major contributor responsible for the exquisite inhibitor selectivity.
Insights
Researchers discovered novel sulfophenyl acetic amide (SPAA) inhibitors targeting low molecular weight protein tyrosine phosphatase (LMW-PTP). These inhibitors show high selectivity, offering potential for oncology and diabetes treatments.
Area of Science:
- Biochemistry
- Enzymology
- Drug Discovery
Background:
- Low molecular weight protein tyrosine phosphatase (LMW-PTP) regulates critical signaling pathways.
- LMW-PTP is a potential therapeutic target for oncology and diabetes/obesity.
- Development of potent and selective LMW-PTP inhibitors is of significant therapeutic interest.
Purpose of the Study:
- To discover and characterize novel inhibitors of LMW-PTP.
- To investigate the structural basis for inhibitor selectivity.
Main Methods:
- Synthesis of sulfophenyl acetic amide (SPAA)-based compounds.
- Enzyme inhibition assays against LMW-PTP and a panel of other protein tyrosine phosphatases (PTPs).
- X-ray crystallography to determine the binding mode of inhibitors.
Main Results:
- Discovery of a novel class of SPAA-derived LMW-PTP inhibitors.
- Some SPAA inhibitors demonstrated >50-fold selectivity for LMW-PTP over other PTPs.
- X-ray crystallography revealed an induced-fit mechanism involving a novel hydrophobic pocket.
Conclusions:
- SPAA-based compounds represent a promising new class of selective LMW-PTP inhibitors.
- The observed induced-fit mechanism explains the high selectivity of these inhibitors.
- These findings support the therapeutic potential of LMW-PTP inhibitors in cancer and metabolic diseases.
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