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Updated: Mar 14, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Microbiome, Metabolome and Inflammatory Bowel Disease
Ishfaq Ahmed1, Badal C Roy2, Salman A Khan3
1Department of Surgery, University of Kansas Medical Center, 3901 Rainbow Blvd, 4028 Wahl Hall East, Kansas City, KS 66160, USA. iahmed@kumc.edu.
Inflammatory Bowel Disease (IBD) involves immune responses to gut microbes. Research explores diet
Area of Science:
- Gastroenterology and Immunology
- Microbiome Research
- Metabolomics
Background:
- Inflammatory Bowel Disease (IBD), encompassing Crohn's Disease (CD) and Ulcerative Colitis (UC), arises from complex interactions.
- Altered immune responses to gut microbiota are implicated in IBD pathogenesis.
- Epigenetic, environmental (microbiome, metabolome), and nutritional factors significantly influence IBD.
Purpose of the Study:
- To investigate the role of diet and the gut microbiome in IBD.
- To explore the potential of pre/probiotics and low-FODMAP diets in modulating the gut microbiome and metabolome.
- To identify unique metabolomic fingerprints for IBD diagnosis and management.
Main Methods:
- Review of current research on IBD, diet, and the gut microbiome.
- Analysis of studies examining pre/probiotics and FODMAP-reduced diets.
- Exploration of metabolomic profiling in IBD patients.
Main Results:
- While the link between dysbiotic microbiota and IBD is suggested, conclusive data on diet's role is still developing.
- Ongoing studies focus on dietary interventions to impact the gut microbiome and metabolome.
- Metabolomic fingerprints show promise for understanding IBD.
Conclusions:
- Dietary interventions and microbiome modulation are active areas of IBD research.
- Identifying specific metabolomic signatures could aid in early diagnosis and personalized treatment strategies for IBD.
- Further research is needed to establish definitive dietary guidelines for IBD patients.
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